Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo13g3897 | ATGAGCCCGAAACGACAGCGTAAAGGTGCAAAAAATACGCAAAATAAGAAGGTTTTAGGGGTGGTTCTGATTTTATTGACGATGGCTCGGGTCTATATTGGGAATCTGGACCCTCGTGTGTCTGAGAGGGATCTCGAAGATGAATTTCGTTTATTTGGTGTTCTTCGGAGTGTCTGGGTTGCTCGTAGACCGCCCGGATATGCATTCATCGAGTTTGATGATAGGAGGGATGCACTTGACGCAATTCATGCCTTGGATGGGAAAAATGGGTGGCGCGTAGAGCTTTCTCATAATTCTAAGGGAGGAGGCCGTGGTGGGCGTGGGCGTGGAAGTGATGACCTGAAATGTTATGAATGTGGTGAACCTGGACATTTTGCAAGGGAGTGTCGCTTGCGCGTTGGTTCACGTGGCCTGGGTAGTGGAAGGAGGCGAAGTCCAAGTCCTTATTATAGGCGTCGCAGAAGTCCAAGTTATGGGTATGGCCGCAGGAGTGTTAGTCCTCGTGGGAGAAGATCTCCAAAGAGACGTAGCATATCACCTCCTTATCGGGGTCGCAGCTACAGCAGGTCCCCTCCATACCGACATGCTCGCCGTGATTCACCTTATGCCAATGGTGACTAG | 621 | 0.504 | MSPKRQRKGAKNTQNKKVLGVVLILLTMARVYIGNLDPRVSERDLEDEFRLFGVLRSVWVARRPPGYAFIEFDDRRDALDAIHALDGKNGWRVELSHNSKGGGRGGRGRGSDDLKCYECGEPGHFARECRLRVGSRGLGSGRRRSPSPYYRRRRSPSYGYGRRSVSPRGRRSPKRRSISPPYRGRSYSRSPPYRHARRDSPYANGD* | 207 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo13g3897 | 206 | PANTHER | SERINE/ARGININE-RICH SPLICING FACTOR RSZ21A-LIKE ISOFORM X1 | 20 | 204 | - | - | |
| Amo13g3897 | 206 | MobiDBLite | consensus disorder prediction | 136 | 206 | - | - | |
| Amo13g3897 | 206 | CDD | RRM_SRSF3_like | 30 | 98 | - | - | |
| Amo13g3897 | 206 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 20 | 204 | - | - | |
| Amo13g3897 | 206 | SMART | c2hcfinal6 | 115 | 131 | IPR001878 | GO:0003676|GO:0008270 | |
| Amo13g3897 | 206 | Gene3D | - | 29 | 96 | IPR012677 | - | |
| Amo13g3897 | 206 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 29 | 100 | IPR000504 | GO:0003723 | |
| Amo13g3897 | 206 | SUPERFAMILY | Retrovirus zinc finger-like domains | 96 | 133 | IPR036875 | GO:0003676|GO:0008270 | |
| Amo13g3897 | 206 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 31 | 88 | IPR000504 | GO:0003723 | |
| Amo13g3897 | 206 | Pfam | Zinc knuckle | 115 | 130 | IPR001878 | GO:0003676|GO:0008270 | |
| Amo13g3897 | 206 | Gene3D | - | 102 | 177 | - | - | |
| Amo13g3897 | 206 | SMART | rrm1_1 | 30 | 96 | IPR000504 | GO:0003723 | |
| Amo13g3897 | 206 | MobiDBLite | consensus disorder prediction | 192 | 206 | - | - | |
| Amo13g3897 | 206 | SUPERFAMILY | RNA-binding domain, RBD | 29 | 108 | IPR035979 | GO:0003676 | |
| Amo13g3897 | 206 | ProSiteProfiles | Zinc finger CCHC-type profile. | 115 | 130 | IPR001878 | GO:0003676|GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo13g3897 | Amo-Chr13 | 130729788 | 130732391 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo13g3897 | K12896 | - | rcu:8262005 | 212.616 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Amo13g3897 | 13 | 130729788 | 130732391 | Amo13g3897 | 13 | 130729788 | 130732391 | ECH |