Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3767 ATGCCGTGCCAGGACTCGGAGCTGAAGGCGGCGAAGACTGCGTACCGGAGCGCCAGGGTTGAGGGTAACCACCGCGAGGAGGCGCGTTGGGCCAACGTCATTGGCGACATTCACAAGAACAGAGGAGAGTACGTGGAAGCCCTCAAATGGCTCCGAATCGATTACGATGTTTCGCTAAAATACTTGCTGGAAAAGGATTTGCTCCCTACCTGCCAATCCATCGGCGAGATGTACCTCCGCCTCGAGCAGTTCTCTGAAGCTCTAACTTACCAGAAGAAGCACTTGGAGCTTGCAAGAGACGCTGACGATGTGGTTGAGCAGCAAAGAGCGAGCACGCAGCTAGGTCGAACATACCACGAGCTGTTCTCGAGATCCGATCACGACCACAACTCAATTCGCAACGCGAAGAAGTATTTCAACTTCGCAATGGAGCTTGCAGTGGCTCTGAAGAAGAAACCGCCAAGCAGCAAGTCTTCGTTCCTGAAGGAGTATATCGATGCGCACAACAACAAAGGGATGCTGGAAATGGAGCTCGATAACTTCCAGGAAGCGAAGGAGATACTAACTCGAGGGTTGGAAATTTGTGATGAGGAGGAGGTTAGTGAATTTGATGATGGGAGGAGCAGGCTCCACCATAACCTTGGGAATGTGTACATGGAACTCAGGAATTGGAATGAAGCTAGGAGGAATATCAAAATGGACATTCAGATTTGTAACAAGATTGGCCACCGTCAAGGGGAAGCGAAAGGGTATATCAATCTTGGGGAATTGCATTCCAGGACTCAGAAGTATGAGGAGGCAATCTGTTTTTATAACAAGGCACTTGGTTTGGCAAGGTCCTTGGAGGATGAGGATGCTTTGGTGAGGCAAATTGAGCAGAATATTAGGACTGTAAAGGAAGCTGTCAAAGTGATGGATGAGATAAAGAAGGAAGAGCAGAACCTCAAGAAGCTTAAAAGAGATATCGCCGCTGCCAGAGGGACACCTAATGAGCGGAAATGCCTGCTCCAGCAGAATGGCTCTCTTGAACGCCTTGTGGAGAAGTCAAGAATGATATCTGCATGGGAGAAGCATTGCGAATTTGCAAAGGAGAAAAAGAGAATAGCAAGTGAACTTTGTGACAAGCAAAGGCTTGGTGATTCATATATGGATGTTGGAGAATCATATCAGAAGCTTAGAAAATTCAACAAAGCAATCAAATGGTACAAGAAGAGTTGGGAAATGTACCAAACAATTGGCAGTTTAGAGGGTCAAGCATTGGTAAAAATCAATATTGGCAATGTTTTGGATTCTGCTCAAAAGTGGAGACAAGCATTAGATGCATATACTGAAAGCTATAGGATTGCTGTTGAAGCTCAACTTCCTGATATACAGCTTTCTGCATTAGAAAATATGCATTATAGTAACATGATAAGATTTGATGATGAATCCGAGACAAAGAGGTTGAAAATTTTAATTGATAAGCTGAAGAACTCAATAGAAGATGAGTCAGGTGCTAAAAATATGGCAGAAGATTGTTGCTCTGAGACTGATACTGAGGCAGACAATAATCTGTCAATAGCTGGGTCTGATGACCTTTGCTCTCCACATACCAGTTCTAGATCAAAAGCTCTATCTACTGGAGAAGAATTTATAGATGACATGCCGCTTCTGTCAATCTATCAGTCCTTAAAAGGCTCATCCAGAAAGACAACAGGTCACATGGAAGATCTTACCAACACCAAGCAAGCTGATAAGTCATCCAAAAGTCTTACAAATTTAACCGGTAATCATCAGGCAGTTGTTGGACGTAAACGTGTCCGTGTAATTCTTTCTGATGATGAAGATGAGATGGAGTGTTCAAGCAAACGGAGTCATGATTGCGTGTTAGAAGACAGGTCTACTTATGATGCAAATATGAGTAAAGTGAGTCCTAGTAACATTAAGGTTGTCTCAGAGAATGGATCCAAACTTCCAATTAATGTTGAAGAAAGTAGCAGTTCTTTCAAATGCTGGAGTCCACATACACTTGCTAAAACTTGCAGACATTCCAGATCCACGAGCAATGACCTAGTTGCTGAACTTGATCTTCCTAGTGGTTCTAAATGCAACACAGATGCCTCTGGTAAACCAAGTGATGCTGCCCCTCCTGCGTCAAATAGTTCTCAATACGATAAATATATTGAGTGCCAGATTGGGAATGATCTAATTCACATAGAAGCAACCTGGTGTACTGCCAGTGATAAGCTGGATATTGAATCTTTGAAAGCTGTAGCTGCATGCTTATACTATCTACAACTTCCTACACAAAAGAGATCAGATGGTCTGTTGCCTGTTGTTCAGCACATTTTATGTGCTGGAAGAGATCTAGAATCCCTAGAAACTGTTGAAAACCTTCAGATATGCCTGGGAAATGTCACAGTTGAAGCATCCATTGATGGATGGATTCATAAGCGCCTCATAAAAATGTATGTAGACTTTTGCAAGCAGCTGTCAGAGAAGCCAAATATGAAGGTACTGAAGAAACTCTACAATCTAGAGGTTTCGGATGATGAAATAGTAGTGTCTGAGTGTGACCTGCAAGATTTGTCTATAACCCCATTGATAAATGCACTGCAGTCCCAAAAAGCATTTTCAATGCTTGACCTCTCTCACAATTTGTTAGGAAATGGGACAATGGAAGCACTTCAGAAGGTCTTCACAGCATCAGACCAACATTATGGTGACTTAACACTCGATTTGCATTGTAATCGATTTGGTCCAACCGCTCTGCTACAGATTTGTGAATGCTCAGTGCTGTTTGATAGACTGGAAGTGCTCAACATTTCTGGAAATCGTCTTACTGATGCATGTGGATCTTATCTTTCAACTATCTTGAAAAAATGTAAAGCCCTCTATAGCTTGAATGTAGAGAACTGCTGTATCACATCCAGAACTATTCAAAAGATTGCTGATGCACTGGACTCTACATCCGTACTTGCTTATCTCTGTATAGGACATAACAGCCCTGTATCTGGAAATACTATAGTTAATCTTTTGTCCAAGCTTTCCACTTTGAAAAGGTTTTCGGAGCTGAATCTCAGTGGTCTAAAACTAGGCAAACCAGTAGTTGATGCCCTTTGCCAGCTTGCAGGTACCTTGAGTTTATCAGGACTAATTCTTGGAGGTACCAGTATCGGAACAGAAGGGGTAATGCAATTAGCAGAACCATTGCTGAAAGGGGCTGAAGAGTTTGTGAAACTTGATCTATCATATTGTGGGCTCACATCAAACTTTGTTTCAAATATCAATGTTAATTTGTTTTGTTCCATCCTTGAGCTGAACCTGGAAGGAAATCCTATTCTGCCTGAGGGCGGAAATACTCTATGTTCTCTTCTAGTAAACCCATCATGCTCTCTCAAAGTGTTGGTCCTTAGAAAGTGTCAACTTGGGCTCGCTGGGGTTCTCCACATAATTGAGGCACTCGCAGAGAACAACAGCCTGGAGGAGCTTAATCTTGCTGATAATACTGTACCAAATGAACTTTATTCTCTAAAATCCGACTTAACAGTAAAAGGTGACACTGAAAAACACGATCAGATACTTGATACGATTAAGTTGGCGGGTAATCAAGAGGTCCATTGCTCTGTAAACTTGGACTACCATCAGCTTGAAGTTGCTGATAGTGAAGATGAAACAGTTAAAGCAGCTGCTTCTGGAATAGATGACAGTGCCAGTTCGTGTCAAAGAAATTCTTCATCTGCAGAGTGCCTTTTAACTCAACAACTTGCAGTGGCTATTGGCAAGGCAAAGAAATTGCAATTACTAGACCTTAGCAACAATGCTTTTTCATCGGAAGCTGCAGAAACTTTCTATAATTCCTGGACAAGTGTACGGGTGCCAAGTCAGAAGCACATTAATGAGGGGATTATGCATTTCTCAACAAAAGAAAAGAAGTGCTGCAGAGTGAAACCGTGCTGCAAAAAAGTCCTGCCTTTATAG 3960 0.4242 MPCQDSELKAAKTAYRSARVEGNHREEARWANVIGDIHKNRGEYVEALKWLRIDYDVSLKYLLEKDLLPTCQSIGEMYLRLEQFSEALTYQKKHLELARDADDVVEQQRASTQLGRTYHELFSRSDHDHNSIRNAKKYFNFAMELAVALKKKPPSSKSSFLKEYIDAHNNKGMLEMELDNFQEAKEILTRGLEICDEEEVSEFDDGRSRLHHNLGNVYMELRNWNEARRNIKMDIQICNKIGHRQGEAKGYINLGELHSRTQKYEEAICFYNKALGLARSLEDEDALVRQIEQNIRTVKEAVKVMDEIKKEEQNLKKLKRDIAAARGTPNERKCLLQQNGSLERLVEKSRMISAWEKHCEFAKEKKRIASELCDKQRLGDSYMDVGESYQKLRKFNKAIKWYKKSWEMYQTIGSLEGQALVKINIGNVLDSAQKWRQALDAYTESYRIAVEAQLPDIQLSALENMHYSNMIRFDDESETKRLKILIDKLKNSIEDESGAKNMAEDCCSETDTEADNNLSIAGSDDLCSPHTSSRSKALSTGEEFIDDMPLLSIYQSLKGSSRKTTGHMEDLTNTKQADKSSKSLTNLTGNHQAVVGRKRVRVILSDDEDEMECSSKRSHDCVLEDRSTYDANMSKVSPSNIKVVSENGSKLPINVEESSSSFKCWSPHTLAKTCRHSRSTSNDLVAELDLPSGSKCNTDASGKPSDAAPPASNSSQYDKYIECQIGNDLIHIEATWCTASDKLDIESLKAVAACLYYLQLPTQKRSDGLLPVVQHILCAGRDLESLETVENLQICLGNVTVEASIDGWIHKRLIKMYVDFCKQLSEKPNMKVLKKLYNLEVSDDEIVVSECDLQDLSITPLINALQSQKAFSMLDLSHNLLGNGTMEALQKVFTASDQHYGDLTLDLHCNRFGPTALLQICECSVLFDRLEVLNISGNRLTDACGSYLSTILKKCKALYSLNVENCCITSRTIQKIADALDSTSVLAYLCIGHNSPVSGNTIVNLLSKLSTLKRFSELNLSGLKLGKPVVDALCQLAGTLSLSGLILGGTSIGTEGVMQLAEPLLKGAEEFVKLDLSYCGLTSNFVSNINVNLFCSILELNLEGNPILPEGGNTLCSLLVNPSCSLKVLVLRKCQLGLAGVLHIIEALAENNSLEELNLADNTVPNELYSLKSDLTVKGDTEKHDQILDTIKLAGNQEVHCSVNLDYHQLEVADSEDETVKAAASGIDDSASSCQRNSSSAECLLTQQLAVAIGKAKKLQLLDLSNNAFSSEAAETFYNSWTSVRVPSQKHINEGIMHFSTKEKKCCRVKPCCKKVLPL* 1320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3767 1319 Pfam Tetratricopeptide repeat 208 279 - -
Amo13g3767 1319 Gene3D Ribonuclease Inhibitor 820 1298 IPR032675 -
Amo13g3767 1319 SMART LRR_RI_2 955 982 - -
Amo13g3767 1319 SMART LRR_RI_2 1039 1066 - -
Amo13g3767 1319 SMART LRR_RI_2 1094 1121 - -
Amo13g3767 1319 SMART LRR_RI_2 1151 1177 - -
Amo13g3767 1319 SMART LRR_RI_2 868 895 - -
Amo13g3767 1319 SMART LRR_RI_2 1123 1150 - -
Amo13g3767 1319 SMART LRR_RI_2 927 954 - -
Amo13g3767 1319 SMART LRR_RI_2 1256 1283 - -
Amo13g3767 1319 SUPERFAMILY TPR-like 149 284 IPR011990 GO:0005515
Amo13g3767 1319 Pfam Tetratricopeptide repeat 380 405 IPR019734 GO:0005515
Amo13g3767 1319 Pfam Tetratricopeptide repeat 166 194 IPR019734 GO:0005515
Amo13g3767 1319 SMART tpr_5 248 281 IPR019734 GO:0005515
Amo13g3767 1319 SMART tpr_5 68 101 IPR019734 GO:0005515
Amo13g3767 1319 SMART tpr_5 419 452 IPR019734 GO:0005515
Amo13g3767 1319 SMART tpr_5 208 241 IPR019734 GO:0005515
Amo13g3767 1319 SMART tpr_5 165 198 IPR019734 GO:0005515
Amo13g3767 1319 SMART tpr_5 379 412 IPR019734 GO:0005515
Amo13g3767 1319 PANTHER PROTEIN TONSOKU 1 1315 IPR044227 GO:0005634|GO:0006325|GO:0009933|GO:0040029|GO:0072423
Amo13g3767 1319 SUPERFAMILY TPR-like 375 454 IPR011990 GO:0005515
Amo13g3767 1319 Gene3D Tetratricopeptide repeat domain 2 313 IPR011990 GO:0005515
Amo13g3767 1319 Gene3D Tetratricopeptide repeat domain 314 471 IPR011990 GO:0005515
Amo13g3767 1319 SUPERFAMILY RNI-like 833 1282 - -
Amo13g3767 1319 SUPERFAMILY TPR-like 23 121 IPR011990 GO:0005515
Amo13g3767 1319 Coils Coil 281 328 - -
Amo13g3767 1319 ProSiteProfiles TPR repeat profile. 379 412 IPR019734 GO:0005515
Amo13g3767 1319 MobiDBLite consensus disorder prediction 562 588 - -
Amo13g3767 1319 ProSiteProfiles TPR repeat profile. 248 281 IPR019734 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3767 - - aprc:113856161 1942.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3767 13 127153131 127161611 Amo13g3767 13 127153131 127161611 ECH