Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3757 ATGAAGGGTGGGACGGTTCAGATCAGCTGGCACGAGAGTAAGCCCATCTTATCCCTTGATTTCCACCCTTCCTCCTCCACTCTCGCTACCGCCGGCGCCGATTTCGACATCAAGTTATGGTCGATTAAGCCATCCGAATCACAGAAGCTTCCCACAGTTACCTATCTCAACAGCTTGTCTTCTTATCATTCTTCCTCTGTCAATGTTATTCGCTTCTCTTCTTCCGGGGAGCTACTAGCCTCTGGTGCTGATGGAGGTGACCTGTTAATATGGAAGTTACACTCTACTGATGCTGGCCAGACATGGAAGGTTCTTAAGACTTTACGATCTCATCACAAGGATATCCTTGACCTGCAGTGGTCTCCTGATGCCAATTATATCATATCTGGATCAGTTGATAATTGTTGCATTATATGGGATGTAAACAAAGGCACTAACCTTCAAACGTTGGATGCCCATGCACATTATGTTCAGGGAGTTGCATGGGACCCTCTAGGGAAGTATGTTGCCTCTCTTAGTTCTGACAGGACATGCCGAATTTACATCAATAAGCCTCATAAATCAAAGGGAATTGAGAAAATCAATTACGTTTGTCAGCAAGTTATTTCCAAGGCAGAACAGCCATTATTCAAGAATTCTAAGTCTACAAAGTATCATCTCTTCCATGATGAGACATTGCCATCTTTCTTCAGAAGATTATCCTGGTCTCCTGATGGTTCATTTCTACTTGTGCCTGCAGGTTCTTACAAAATTGGCACTGGATCTGATGCTGTATATGCGACTTACATATTTTCTAGAAACGATCTTTCTCGGCCTGCTATACAGCTTCCTTCTGCAAGCAAGGCTGTTGTTGCTGTACGGTTCTGCCCCATATACTTTAACCTTCGGGGAACAAACTCAGATGGCTTATTTAAGCTCCCATATCGCATCATATTTGCCGTGGCCACTTTGAATTCACTGTTCATTTATGACACTGAGAGCACTCTTCCAATAGCTGTATTAGCTGGTCTTCACTATTCCTCAATAACGGACATCAGCTGGTCACCTGATGCCCGTTATTTGGCTTTATCTTCACAAGATGGTTTCTGCTCTTTGGTGGAATTTGAAAATGACGAACTTGGAACACCTTTCTCTTTATCAGATGGAAAGGTGTCAGACAAGGATATTAAAAGTCTGCTGCAGACAGCCAATGACACCATTGTACCAATTAGGAATGTTGGTCCAGTTGTAGATGAAAATTCGAAAATGCAAGCAGAAGGTGCTGATTGTATGATCATTGAATCAGTTAATACTGGTACAGATTTATTAGAAAGCAGGGAAACTTCTGCACAAAGAAAGGCTGATGACAGTGACATGATCAAGTCAACTGGGAGTGCTCAATCTGCTATGACTGACAGTGAGACAAATGAAGCTGAAGAGAAAGCTGATAAGATGGCTGCTGAGGCAACTGTGAATGTTAAAGAGGTTGTATCAGATTGTAGGAAAAAGAAAGCAGAAGAGGTTGATGATGTGGCCACTCAGCCAACTGGGAATGTTGAAGAAGCTGATTTAGGTAGTAGAAAAATTGAAGCTGAAGACAAGGCAGAGAAACAAGTATTGAGTTCAGGCAGCGTAAAATGTGGAGCAGAAGAGAAGGAAGAGAAGCCACAATCAAGTTTAGATGCTACAAAATCAGGACCAAATGAAGAAACAGCAGGGAAACAAATTTCCAGTTCAAAGAGTACACCCATTCCTAACAAGCCAGCCAGGAAGCGTATTACGCCCATTGCAATTGATCCATGA 1782 0.4259 MKGGTVQISWHESKPILSLDFHPSSSTLATAGADFDIKLWSIKPSESQKLPTVTYLNSLSSYHSSSVNVIRFSSSGELLASGADGGDLLIWKLHSTDAGQTWKVLKTLRSHHKDILDLQWSPDANYIISGSVDNCCIIWDVNKGTNLQTLDAHAHYVQGVAWDPLGKYVASLSSDRTCRIYINKPHKSKGIEKINYVCQQVISKAEQPLFKNSKSTKYHLFHDETLPSFFRRLSWSPDGSFLLVPAGSYKIGTGSDAVYATYIFSRNDLSRPAIQLPSASKAVVAVRFCPIYFNLRGTNSDGLFKLPYRIIFAVATLNSLFIYDTESTLPIAVLAGLHYSSITDISWSPDARYLALSSQDGFCSLVEFENDELGTPFSLSDGKVSDKDIKSLLQTANDTIVPIRNVGPVVDENSKMQAEGADCMIIESVNTGTDLLESRETSAQRKADDSDMIKSTGSAQSAMTDSETNEAEEKADKMAAEATVNVKEVVSDCRKKKAEEVDDVATQPTGNVEEADLGSRKIEAEDKAEKQVLSSGSVKCGAEEKEEKPQSSLDATKSGPNEETAGKQISSSKSTPIPNKPARKRITPIAIDP* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3757 593 MobiDBLite consensus disorder prediction 498 593 - -
Amo13g3757 593 SUPERFAMILY WD40 repeat-like 13 408 IPR036322 GO:0005515
Amo13g3757 593 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 50 IPR001680 GO:0005515
Amo13g3757 593 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 593 IPR045145 GO:0006335
Amo13g3757 593 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 60 95 - -
Amo13g3757 593 MobiDBLite consensus disorder prediction 437 480 - -
Amo13g3757 593 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 593 - -
Amo13g3757 593 SMART WD40_4 143 182 IPR001680 GO:0005515
Amo13g3757 593 SMART WD40_4 52 92 IPR001680 GO:0005515
Amo13g3757 593 SMART WD40_4 327 367 IPR001680 GO:0005515
Amo13g3757 593 SMART WD40_4 101 140 IPR001680 GO:0005515
Amo13g3757 593 SMART WD40_4 3 41 IPR001680 GO:0005515
Amo13g3757 593 ProSitePatterns Trp-Asp (WD) repeats signature. 127 141 IPR019775 -
Amo13g3757 593 ProSiteProfiles Trp-Asp (WD) repeats profile. 60 101 IPR001680 GO:0005515
Amo13g3757 593 MobiDBLite consensus disorder prediction 516 532 - -
Amo13g3757 593 Gene3D - 2 184 IPR015943 GO:0005515
Amo13g3757 593 Gene3D - 185 386 IPR015943 GO:0005515
Amo13g3757 593 Pfam WD domain, G-beta repeat 63 92 IPR001680 GO:0005515
Amo13g3757 593 Pfam WD domain, G-beta repeat 338 363 IPR001680 GO:0005515
Amo13g3757 593 Pfam WD domain, G-beta repeat 102 140 IPR001680 GO:0005515
Amo13g3757 593 Pfam WD domain, G-beta repeat 10 41 IPR001680 GO:0005515
Amo13g3757 593 Pfam WD domain, G-beta repeat 144 181 IPR001680 GO:0005515
Amo13g3757 593 ProSiteProfiles Trp-Asp (WD) repeats profile. 150 181 IPR001680 GO:0005515
Amo13g3757 593 ProSiteProfiles Trp-Asp (WD) repeats profile. 108 149 IPR001680 GO:0005515
Amo13g3757 593 MobiDBLite consensus disorder prediction 553 578 - -
Amo13g3757 593 PRINTS Beta G protein (transducin) signature 108 124 IPR001632 -
Amo13g3757 593 PRINTS Beta G protein (transducin) signature 127 141 IPR001632 -
Amo13g3757 593 PRINTS Beta G protein (transducin) signature 164 181 IPR001632 -
Amo13g3757 593 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 108 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3757 Amo-Chr13 126826343 126830475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3757 24 181 Miscellaneous Gene Families AT5G08390 29.375 1.07e-14 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3757 K10751 - gmx:547606 818.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3757 13 126826343 126830475 Amo13g3757 13 126826343 126830475 ECH