Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3718 ATGTCCATAAGCATCCACAATCTTCCTCGCTCTTCTGGTATTCTGAGAATCAGAGTTTCTGGAAATAGATTATTCCGCAAGAATGGAAATAAGTGTTCGGGAGCGGGATCTATATCGTGTTCGGCTGGCGCTAGGAATGATGATTTTCTTCCTTCCATTAATCAATTAAGCGATGCACGCCTCATTTATTCCGTTGCTTCATCCATGGGCCATAACCAGGAGTCTCATCCAGAATCACATTTTAGAGTTCCTGCAATTGTCGATGCCCTACAAGAAATGCACCTCACTTCAAAGTTTCGTGGCTCTGAGGTAATTGAACTTCAAAATTTCGAGCCAGCTTCAGTAGATGACATTGCAAGTGTGCATGCAAGAGCTTATGTTTCTGGCCTTGAGAAGGCTATGGATCAAGCATCCGAGAAGGGTCTAATTTTCATTGATAGTTCTGGACCAACCTATGCTACTGCTACTACCTACCGGGAGTCAATTGTTGCTGCTGGTGCTGGATTAGCCTTAGTTGACTCAGTGGTTGCAGCTTCAAAGATAAGTAGAGATCCACCTACTGGTTTTGCTTTGATAAGACCACCGGGACACCATGCTGTTCCACAAGGACCAATGGGCTTCTGTGTTTTTGGAAATGTGGCCATTGCAGCTCGTTATGCTCAGCGTGTTCATGGACTAAAGCGCGTCTTCATAATTGACTTTGATGTTCACCATGGAAATGGAACAAATGATGCTTTCTATGATGATCCAGATATATTTTTCCTTTCAATTCATCAAGATGGAAGCTACCCAGGTACTGGTAAATTTGACGAAGTTGGCAGCGGAGCTGGTGAAGGAACCACTCTAAATTTGCCTCTTCCTGGAGGATCAGGTGATACTACTATGAGAACAGTGTTTGATGAAGTCATTGTACCTTGTGCTCAAAGATTTAAGCCAGATATAATCCTTGTTTCTGCTGGATATGACGGGCACGTATTGGATCCACTAGCCAACCTTCAATACACAACTGGAACATATTACACGCTTGCTTCCAACATTAAACAACTATCAAAAGAGTTATGTGGAGGCAGATGCGTGTTCTTCTTAGAAGGAGGATACAACTTAAAGTCTCTTTCATACTCAGTGGCAGACACATTCCGTGCTCTTCTCGGTGACCCAAGCTTGGCATCTGAGTTTGATGACCCCAATATTTTATATGAAGAGCCATCAACAAAGGTTAAGCAAGCTATTCAGAGGATTAAATCCATTCATTCCCTGTGA 1260 0.4294 MSISIHNLPRSSGILRIRVSGNRLFRKNGNKCSGAGSISCSAGARNDDFLPSINQLSDARLIYSVASSMGHNQESHPESHFRVPAIVDALQEMHLTSKFRGSEVIELQNFEPASVDDIASVHARAYVSGLEKAMDQASEKGLIFIDSSGPTYATATTYRESIVAAGAGLALVDSVVAASKISRDPPTGFALIRPPGHHAVPQGPMGFCVFGNVAIAARYAQRVHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSIHQDGSYPGTGKFDEVGSGAGEGTTLNLPLPGGSGDTTMRTVFDEVIVPCAQRFKPDIILVSAGYDGHVLDPLANLQYTTGTYYTLASNIKQLSKELCGGRCVFFLEGGYNLKSLSYSVADTFRALLGDPSLASEFDDPNILYEEPSTKVKQAIQRIKSIHSL* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3718 419 CDD HDAC_classII 76 383 - -
Amo13g3718 419 Pfam Histone deacetylase domain 76 381 IPR023801 -
Amo13g3718 419 Gene3D Histone deacetylase domain 51 418 IPR037138 -
Amo13g3718 419 SUPERFAMILY Arginase/deacetylase 71 387 IPR023696 -
Amo13g3718 419 PRINTS Histone deacetylase superfamily signature 194 217 IPR000286 -
Amo13g3718 419 PRINTS Histone deacetylase superfamily signature 228 243 IPR000286 -
Amo13g3718 419 PRINTS Histone deacetylase superfamily signature 312 322 IPR000286 -
Amo13g3718 419 PANTHER HISTONE DEACETYLASE 32 418 - -
Amo13g3718 419 PANTHER HISTONE DEACETYLASE 14 32 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3718 Amo-Chr13 125726242 125730564 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3718 - - gmx:100788664 689.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3718 13 125726242 125730564 Amo13g3718 13 125726242 125730564 ECH