Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3713 ATGGGAAATTCAGCGTCAACAGATGATTCTAGTGATGATTTCGTTCATCACCATTCTTCTTATGATGGGATTTCGGGGACTACTAGCTATGATTATCATCAACCCTCTTCTTATGATGGGACTTCAAGGAATACTAGCTATGATTATTATCCCCAACCAACTTCTTATGATGAAACTTCAAAGAACAATAGCTATGAGGATTATCGCCAACCTTCTTCTTATGCTGGGAGTTCGAAGAATACTAAATACCAGCAAATCGAGCGCCCCACTTATATAGCTGATAATTTCAGTTCACTTGATCAGGTTATTACTGCTCTTAGAGAAGCTGGTCTGGAATCATCAAATTTAATACTTGGTATTGATTTCACCAAAAGCAACGAATGGACAGGCAAGCACTCATTCAACCACAAAAGCCTTCATCATATTGGCCGGATTCCGAATCCATACGAGCAGGCAATCTCCATCATCGGCCGTACTCTCGCTGCTTTTGACGAGGATAATCTGATTCCATGTTTTGGATTTGGTGATGCATCTACGCATGATAAGTATGTGTTCAACTTTTATCCTGATGGTCGCTCTTGTCGTGGTTTTGAGGAAGTACTTGCACGCTACAGAGAGATTGTTCCACTCTTAAAATTGGCAGGTCCAACATCATTTGCACCTGTAGTTGATGCGGCAATTGACACTGTGGAGAGAAGCCAGGGTCAATATCATGTTCTAGTAATTATTGCTGATGGACAGGTCACTAGAAGTTCAGATACACCACATGGAAAGCTTAGTCCACAAGAGCAAGCAACCATTGATTCTATTGTTGCTGCAAGTCACTATCCACTCTCAATTATTTTGGTTGGAGTTGGAGATGGACCATGGGATGAAATGCAACGCTTTGATGATAACATTAAGCACCGGTTATTTGACAACTTTCAGTTTGTGAACTTCACAAAGATCATGTCCGAAAAAGAGGCATCAAAGAAGGAAGCAGCATTTGCACTTGCTGCCCTTATGGAAATTCCAATTCAGTACCGGATAGCCTTAAATTTACAACTTGGAAGTGGAAAATCAATAGGTAACCATCGATGTAACAGGCCTCTGCCTCCGCCTAAGGAAGTTATAGACCATGACAATTCTGTCACCACAGTTCCACGAAATGTTGAATCGGTCGAGCCATCGGCTCCGGCTGTAACTGAATCAGTATGCCCTATTTGCCTAACGAATCCAAAGGACATGGCGTTTGGATGTGGTCATACAACTTGCAGGGAGTGTGGTGCAACATTATCTTCATGTCCTATGTGCCGGCAGGAAATTACAACTCGCCTGAAATTGTACAATTGA 1332 0.4204 MGNSASTDDSSDDFVHHHSSYDGISGTTSYDYHQPSSYDGTSRNTSYDYYPQPTSYDETSKNNSYEDYRQPSSYAGSSKNTKYQQIERPTYIADNFSSLDQVITALREAGLESSNLILGIDFTKSNEWTGKHSFNHKSLHHIGRIPNPYEQAISIIGRTLAAFDEDNLIPCFGFGDASTHDKYVFNFYPDGRSCRGFEEVLARYREIVPLLKLAGPTSFAPVVDAAIDTVERSQGQYHVLVIIADGQVTRSSDTPHGKLSPQEQATIDSIVAASHYPLSIILVGVGDGPWDEMQRFDDNIKHRLFDNFQFVNFTKIMSEKEASKKEAAFALAALMEIPIQYRIALNLQLGSGKSIGNHRCNRPLPPPKEVIDHDNSVTTVPRNVESVEPSAPAVTESVCPICLTNPKDMAFGCGHTTCRECGATLSSCPMCRQEITTRLKLYN* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3713 443 CDD RING-HC_RGLG_plant 398 442 IPR045317 GO:0061630|GO:0070534
Amo13g3713 443 Pfam Copine 138 347 IPR010734 -
Amo13g3713 443 PANTHER COPINE FAMILY PROTEIN 1 70 442 - -
Amo13g3713 443 SUPERFAMILY vWA-like 114 297 IPR036465 -
Amo13g3713 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 374 443 IPR013083 -
Amo13g3713 443 ProSiteProfiles Zinc finger RING-type profile. 399 432 IPR001841 -
Amo13g3713 443 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RGLG3 70 442 - -
Amo13g3713 443 SMART ring_2 399 431 IPR001841 -
Amo13g3713 443 CDD vWA_copine_like 92 341 IPR010734 -
Amo13g3713 443 MobiDBLite consensus disorder prediction 1 81 - -
Amo13g3713 443 SUPERFAMILY RING/U-box 394 438 - -
Amo13g3713 443 SMART VWA_4 113 316 IPR002035 -
Amo13g3713 443 MobiDBLite consensus disorder prediction 21 81 - -
Amo13g3713 443 Pfam Zinc finger, C3HC4 type (RING finger) 396 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3713 Amo-Chr13 125563447 125566818 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3713 K16280 - gmx:100791316 647.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3713 13 125563447 125566818 Amo13g3713 13 125563447 125566818 ECH