Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3470 ATGGCATTGCAATTCCTTTCTGTTCCACACGTTCTATCTTCTAAAACAACAAAGAACTCCATAACTGTAATTAACTCCCCACACTTTCATTTTCGTTCCACACTCTTCCTTCCTTCTTTAAATCCCACTCCATTCCCAACGCTTCTTCGCTCTCGACCTCCCGGAGCTATTGGCCCCGACGGCAAGTTCTACCCTAACTCCGCCGACGACGACCCCCCTGAGGTCCTCGACGACTCCTCCCACGGCTTCTCCACCTTCCACCAAATCCAAGCGCAGGCCAACCGTGCCCGCCAGCTCCAGGAAGAGGACTTCGAGAAGAACCAGTCCACATACCTCGCCGCCATAGCTGACGTCGAGGATGCCCCCGATAACACCTCCCTTATCGATTCTGACAACTCCGGGGACGACCTGTTCGGCGAAATTGACAAGGCAATTGCTTTGAAGCGCAAGGAGTTCGTCAAGGAGGGGCTTCTTCCGCCCAATCCAAGGAAAGATCCCGCAATTGAGGGAATCGAAGAGCTTCAGCCCGAGGAGGTAGTTGATTTGGAGGAAATCAGTGAGCTTCAGGGTCTCCGGGTGGTTTCCGCGGATGATTCCGACGAACCGTTATTAAATGAAGGTGAATTCCATGGGCAAAAAATTCGAGGTTCGGTATCTGAATCTCAGTCTCCTTTTGATTTAGATTTCGATATGTATGGGAAGAGTAAGGCTAGGATTGTGGAACCTAAGTTTAGGATGAGTTTAGCTGAACTTTTGGATGAGAGCAAGGTGGTGCCTGTTTCTGTGTATGGTAACTTGGAGGTTGAGATAACTGGGATTCAGCACGATTCGAGGATAGTAACTTCCGGTGACTTGTTTGTGTGCTGTGTTGGGAGGAAAACTGATGGGCATTTGTTCTTGACTGAAGCTGATAAGCGAGGAGCTGTTGCTGTTGTGGCCAGTAAAGAGATTGACATTGAGGAAACCTTGGGTTGCAAGGCTTTGGTCATTGTGGAAGACACTAATGCAGTTCTTGCTGCGTTGGCCGCCTCGTTTTATAGGCATCCTTCCAAGAACATGGCCGTTATTGGCATCACTGGGACGTATGGGAAGACAACCACCACATGTTTGATAAAGAGTATGTATGAGGCGATGGGGCTACGGACAGGGATGTTCAACTCGGTTGCTTGTTATGTGCACGGGGATAATCAGTTGGAGTCACATAATAAAACCCCAGATGCTGTTTTAGTTCAGAATTTGATGGCGAAGATGCTTCACAATGGAACTGAAGCTGTAGTCATGGAGACTTCTTCTGATGTATTGGCTCAAGGGAAGTGTGATGAGGTTGATTTTGATATTGCGGTCTTTACAAATTTGAGTGAGGAGGCAGATAGAGATGCGAAGGTTAAATTGTTCTCGAGAATGGTGGATCCTGAACGGCATAGGAAGATTGTTAACATTGATGATCCAAATGCACATTTCTTCATTTCCGAGGGAACTCCAGAAGTTCCCGTTGTAACGTTTGCATTGGATAATAAGAGTGCGGATGTTCATCCCTTGAAGTTTGAACTCTCCTTGTTTGAGACGCAGGTGTTGGTTAATACGCCCACTGGCATACTAGAAATTTCTTCAGGTTTGCTCGGAAAGCATAACATTTACAACATTCTTGCTGCAGTGGCAGTTGGAATTGCTGTTGGGGCACCCTTAGAGGATATTGTTAGAGGGGTTGAAGAGGTTGATGCAGTTCCTGGTAGGTGTGAGTTAATTGATGAAGAACAAGCATTTGGGGTGATAGTGGACTATGCAAAAACTCCCGATGCCCTTTCTAGATTGCTTGATAGTGTAAGAGAGCTTGGACCTCGCAGGATTATAACTGTTATTGGGTGCTGTGGTGAGGGCGACAGGGGGAAGAGACCTATGATGACCAAGATAGCAACAGATAAAAGTGAAGTGACCATGCTGACATCTGACAATCCCAAGAGTGAAGATCCATTGGATATTTTGGATGATATGCTGGCTGGGGTAGGATGGTCAATGCAGGACTACCTGAAACATGGAGAGAATGATTATTATCCACCTCTTCCAAATGGTCATAGGCTTTTTCTCCACGACATTAGGAGGGTAGCTGTGCGAGCTGCAGTTGCAATGGGAGAGGAGGGTGATGTAGTTGTGGTTGCCGGCAAAGGTCATGAAACATATCAGTTAGAAGGTGATAAGAAAGACTTCTTTGATGATCGGGAAGAGTGCCGAGAGGCATTGCAGTACGTAGATGAGCTTCACCAAGCTGGAATAGATACAAGTGAATTTCCATGGAGGTTACCAGAGAGCCACTGA 2313 0.4687 MALQFLSVPHVLSSKTTKNSITVINSPHFHFRSTLFLPSLNPTPFPTLLRSRPPGAIGPDGKFYPNSADDDPPEVLDDSSHGFSTFHQIQAQANRARQLQEEDFEKNQSTYLAAIADVEDAPDNTSLIDSDNSGDDLFGEIDKAIALKRKEFVKEGLLPPNPRKDPAIEGIEELQPEEVVDLEEISELQGLRVVSADDSDEPLLNEGEFHGQKIRGSVSESQSPFDLDFDMYGKSKARIVEPKFRMSLAELLDESKVVPVSVYGNLEVEITGIQHDSRIVTSGDLFVCCVGRKTDGHLFLTEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNAVLAALAASFYRHPSKNMAVIGITGTYGKTTTTCLIKSMYEAMGLRTGMFNSVACYVHGDNQLESHNKTPDAVLVQNLMAKMLHNGTEAVVMETSSDVLAQGKCDEVDFDIAVFTNLSEEADRDAKVKLFSRMVDPERHRKIVNIDDPNAHFFISEGTPEVPVVTFALDNKSADVHPLKFELSLFETQVLVNTPTGILEISSGLLGKHNIYNILAAVAVGIAVGAPLEDIVRGVEEVDAVPGRCELIDEEQAFGVIVDYAKTPDALSRLLDSVRELGPRRIITVIGCCGEGDRGKRPMMTKIATDKSEVTMLTSDNPKSEDPLDILDDMLAGVGWSMQDYLKHGENDYYPPLPNGHRLFLHDIRRVAVRAAVAMGEEGDVVVVAGKGHETYQLEGDKKDFFDDREECREALQYVDELHQAGIDTSEFPWRLPESH* 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3470 770 Pfam Mur ligase family, glutamate ligase domain 575 658 IPR004101 GO:0009058|GO:0016881
Amo13g3470 770 Pfam Mur ligase middle domain 358 554 IPR013221 GO:0005524|GO:0009058|GO:0016881
Amo13g3470 770 PANTHER UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE MURE HOMOLOG, CHLOROPLASTIC 225 760 - -
Amo13g3470 770 MobiDBLite consensus disorder prediction 50 75 - -
Amo13g3470 770 SUPERFAMILY MurE/MurF N-terminal domain 247 349 IPR035911 -
Amo13g3470 770 Gene3D - 580 757 IPR036615 GO:0009058|GO:0016881
Amo13g3470 770 Hamap UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 246 746 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
Amo13g3470 770 SUPERFAMILY MurD-like peptide ligases, peptide-binding domain 575 747 IPR036615 GO:0009058|GO:0016881
Amo13g3470 770 Pfam Mur ligase family, catalytic domain 269 346 IPR000713 GO:0009058|GO:0016881
Amo13g3470 770 SUPERFAMILY MurD-like peptide ligases, catalytic domain 349 572 IPR036565 GO:0005524|GO:0009058
Amo13g3470 770 Gene3D - 247 347 - -
Amo13g3470 770 TIGRFAM murE: UDP-N-acetylmuramyl-tripeptide synthetase 268 747 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
Amo13g3470 770 Gene3D - 349 578 IPR036565 GO:0005524|GO:0009058
Amo13g3470 770 PANTHER MUR LIGASE FAMILY MEMBER 225 760 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3470 Amo-Chr13 117034139 117037487 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3470 - - gmx:100776096 1159.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3470 13 117034139 117037487 Amo13g3470 13 117034139 117037487 ECH