Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3461 ATGCCACCGTTTGTAAGTTCTGAAGCAGATGGAGGTGTGCTTAAATGGCAACCCAACATAGTAACCATCGACGTTGGTGGGCAGCTCTTCCAAACGACGAAGCAGACGCTAACTTCAGCAGGTCCCAAAACCTTCTTCTCAAAAATCGCCGAAGCATCATCACCGTACTACGCACCCTTTGTCGACAGAGACCCCGAAATCTTCTCTCTCCTCCTCTCTCTCCTCCGCACCGGCAACCTCCCTTCCAAGGCCAAATCATTCGATCTCCAAGACCTAATCTTGGAATCCCAATTTTATGGCATCGAGAATCTCCTCGTTAATTCTCTCTCAAGCCCCTCCAATTTCGAGCCCTTCAACCTCCACAAATCGCTCTTACTGCCCTTGAACGGAAGGGATTCCCCTTCCACTATCGCCACCACCCGCTACGGTTCCGTCCACGTGGCCCACGGTTCCAAGATCACCACCTTTGACTGGTCCCTCCGCCGAAAATCTACCATCCTCACCCACTTCACAGCCGTGGACTCCCTATTGGCGCTATCTCCATCGTTAGCCGCCGCCGGCGCCACCGATTTTTCCGGCTTGCAGATCCTCGACCTCAATAAGGGACACGTAAGAGAAACCCTAACTTGGGAAAACGTGACGAGATCGGGTTCAACCGTTCAGGCCATTGGTTCCTCGCGGGAGGAACTCTTCGTCAGCTTCGAGTCTTCTCGCCGGAACTCGAACACCATCGTTGTCTACGATCTTCAGAGCCTGAAACCCGTCACTGAGATCGGCCACAACGAGATCTACGGCGCCGATATCGACTCGGCGATCCCGGCGACGAAGCTACAGTGGGTGGAAGGATACAACCTCCTGATGGCGTCCGGGTCCCACAGCGGCCCCTCGGGCGTCTCCGGGAACGTGAGGCTGTGGGACGTGCGGTCAGGGAACGTGGTGTGGGAGCTGCCGGAGAAGGTGGATTGCTTCGCAGACGTGGCAGTTTCTGATCCCTTATCAGTGATCTTCAAGGTCGGGGTGAACTCCGGCGAGGCCTTCTACATTGATCTGCGAAATTTGAGCAGTGGAGGAAACACGAGCAACACGTGGGTGTGTCTCGGTGATAAGAGGAAAGTGACGAATGGGAAGAAGGAAGGGATTGGGTGCAAGGTGGAGACGCAGGGGAACCAAGTGTTCTGCACCAAAGGTGGTGACGTGGAGCTTTGGTCGGAGGTGGTTATGGGGAACAAGAAGGTTGGTGAGAGTGTGTCCGTTGAGGGAGGGAGGATTTTCAAGAAGAACCTCATGGGTAGGGTCCAGGATATGGGTGGTGCTAAAATTACCAATTTAGCCTTCGGTGGTAGCAGGATGTTCCTCACTAAGAGAGACCAACACTTTGTTGAAGTTTGGCAGAGTTCGTCTAGGGAGCTTTGA 1413 0.5407 MPPFVSSEADGGVLKWQPNIVTIDVGGQLFQTTKQTLTSAGPKTFFSKIAEASSPYYAPFVDRDPEIFSLLLSLLRTGNLPSKAKSFDLQDLILESQFYGIENLLVNSLSSPSNFEPFNLHKSLLLPLNGRDSPSTIATTRYGSVHVAHGSKITTFDWSLRRKSTILTHFTAVDSLLALSPSLAAAGATDFSGLQILDLNKGHVRETLTWENVTRSGSTVQAIGSSREELFVSFESSRRNSNTIVVYDLQSLKPVTEIGHNEIYGADIDSAIPATKLQWVEGYNLLMASGSHSGPSGVSGNVRLWDVRSGNVVWELPEKVDCFADVAVSDPLSVIFKVGVNSGEAFYIDLRNLSSGGNTSNTWVCLGDKRKVTNGKKEGIGCKVETQGNQVFCTKGGDVELWSEVVMGNKKVGESVSVEGGRIFKKNLMGRVQDMGGAKITNLAFGGSRMFLTKRDQHFVEVWQSSSREL* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3461 470 SUPERFAMILY WD40 repeat-like 159 464 IPR036322 GO:0005515
Amo13g3461 470 Pfam BTB/POZ domain 21 107 IPR003131 GO:0051260
Amo13g3461 470 Gene3D - 133 470 IPR015943 GO:0005515
Amo13g3461 470 CDD BTB_POZ_KCTD-like 21 99 - -
Amo13g3461 470 SUPERFAMILY POZ domain 19 106 IPR011333 -
Amo13g3461 470 PANTHER PROTEIN BINDING PROTEIN 17 468 - -
Amo13g3461 470 SMART BTB_4 19 116 IPR000210 GO:0005515
Amo13g3461 470 PANTHER BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN FAMILY MEMBER 17 468 IPR045068 -
Amo13g3461 470 Gene3D Potassium Channel Kv1.1; Chain A 15 111 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3461 Amo-Chr13 116313092 116314986 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3461 - - gmx:100792189 729.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3461 13 116313092 116314986 Amo13g3461 13 116313092 116314986 ECH