Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3459 ATGATAACTGCTTTCCTGCCACTGGTATATGGCATCTTTTTGACAACCTTCTTTGAATCAATCTTTGATGTGGCCCTATCAACAATGTCAAATGCAGTGACGGTCTATGAAAAGGGGGCTGAAGTTGTCAGAATGTACAAAACATTACTGGGAAGTCAAGGGTTCCGGAAGGGCATGGATCTTTACTTTAAGAGACATGATGGACAAGCTGTTACATGTGAAGACTTTTTTGCGGCCATGAGAGATGCAAATGATGCAGATTTTGCAAATTTCTTACTATGGTACTCTCAAGCTGGGACCCCTAGTGTCAAAGTTAATACTTCTTACAATTCTGAAGCACATACTTTCTCTTTGAAGTTTAGCCAAGAGATACCACCAACCCCAGGGCAACCAGTTAAGGAACCAATGTTCATTCCCATTGCACTAGGCTTGCTTGATTCAACTGGCAAGGACATTCCTCTTTCAACTATTTATCATGAAGGGACGCTGCAATCTGTTTCAAGCAATAATCAACCGGTCTTCAATACGGTTCTTAGAGTCACCAAGAAAGAAGAAGAGTTTGTCTTCACTGATATATTTGAGAGGCCTGTTCCATCTTTGTTAAGGGGATACAGTGCTCCTGTACGTCTTGAATCTGATCTCACAGATGATGATCTGTTTTTCCTTCTAGCTAACGATTCAGATGAATTCAACTGCTGGGAGGCTGGGCAAATTTTGGCACGTAAACTGATGCTAAACTTGGTTAACGATTTGCAACATAACAAAGCATTGGTTCTGAACCCCAAGTTTGTGGAGGGATTCAAGCGTATTCTATGTGACTCTAGCCTGGACAAAGAATTTGTGGCAAAGGCAATTACCCTGCCAGGTGAGGGAGAAATAATGGATTTGATGGAAGTTGCAGATCCTGATGCTGTTCATGCCGTTCGAACCTTCATTAGGAAGCAGCTTGCAAGTGAACTGAGAGCAGAGTTCCTCAGCACTGTGCAAAATAATAGGAGCTCAGGAGAATATGTGTTTGATCATCCAAACATGGCCAGACGTGCTCTCAAGAATGTTGCTCTTGCTTATCTTGCATGTCTTGAGGATCAAGAATACACTGACCTAGCACTACATGAGTATAAAAKTGCTACAAATATGACTGAGCAGTTTGCAGCCCTGGCTGCCATAGCCCAGAACCCTGGTAAAACCCGTGATGATATTCTTCATGACTTCTATGGCAAGTGGCAACATGACTTCTTGGTGGTGAACAAATGGTTTGCCCTTCAAGCAATGTCTGATGTTCCCAGTAATGTTGCGAATGTGCGGGAACTGATAAACCACCCTGCGTTTGATCTGCGCAATCCCAACAAAGTGTACTCCCTCATTGGAGGGTTCTGTGGTTCTCCGGTGAACTTCCATGCAAAGGATGGATCAGGCTACGAGTTCTTGGGAGAAATTGTTGTGCAACTTGACAAAATTAATCCTCAGGTTGCGTCACGAATGGTATCAGCCTTCTCAAGATGGAGGCGTTTTGATGAGAACAGACAAAAACTGGCCAAGGCCCAGCTGGAGAAGATCATGTCCGTTAATGGATTGTCTGAGAATGTGTTTGAGATTGCTTCCAAAAGCTTAGCTGCTTAA 1620 0.4327 MITAFLPLVYGIFLTTFFESIFDVALSTMSNAVTVYEKGAEVVRMYKTLLGSQGFRKGMDLYFKRHDGQAVTCEDFFAAMRDANDADFANFLLWYSQAGTPSVKVNTSYNSEAHTFSLKFSQEIPPTPGQPVKEPMFIPIALGLLDSTGKDIPLSTIYHEGTLQSVSSNNQPVFNTVLRVTKKEEEFVFTDIFERPVPSLLRGYSAPVRLESDLTDDDLFFLLANDSDEFNCWEAGQILARKLMLNLVNDLQHNKALVLNPKFVEGFKRILCDSSLDKEFVAKAITLPGEGEIMDLMEVADPDAVHAVRTFIRKQLASELRAEFLSTVQNNRSSGEYVFDHPNMARRALKNVALAYLACLEDQEYTDLALHEYKXATNMTEQFAALAAIAQNPGKTRDDILHDFYGKWQHDFLVVNKWFALQAMSDVPSNVANVRELINHPAFDLRNPNKVYSLIGGFCGSPVNFHAKDGSGYEFLGEIVVQLDKINPQVASRMVSAFSRWRRFDENRQKLAKAQLEKIMSVNGLSENVFEIASKSLAA* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3459 539 Pfam Peptidase family M1 domain 33 91 IPR014782 GO:0008237|GO:0008270
Amo13g3459 539 Pfam Domain of unknown function (DUF3458_C) ARM repeats 216 538 IPR024601 -
Amo13g3459 539 PANTHER BNAC06G01820D PROTEIN 24 539 - -
Amo13g3459 539 PANTHER - 24 539 IPR012779 GO:0008270
Amo13g3459 539 Gene3D - 99 212 IPR038438 -
Amo13g3459 539 Pfam Domain of unknown function (DUF3458) Ig-like fold 99 212 IPR035414 -
Amo13g3459 539 Gene3D - 214 538 IPR037144 -
Amo13g3459 539 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 33 105 - -
Amo13g3459 539 Gene3D Neutral Protease Domain 2 18 98 IPR027268 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3459 Amo-Chr13 116260234 116264527 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3459 K01256 - gmx:100803548 905.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3459 13 116260234 116264527 Amo13g3459 13 116260234 116264527 ECH