Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3452 ATGGCACTAATTTGGCAACTCAACCTTCTCTTCTCACCTCTCATAATAATATGCTTATTATCAAACGTGGTTTCTTCACGCACTAGGCCCTTCACAGCTCCAACTGTGACACCCTTGACTAATTCCTTCCCTCGTGTCCCAATTGATCCTAATTTTTCTAATGCTTTTGGGGCCTCCAATATCAAGCTTCTTGCTAATGGGACCATGGCCACTCTGGCTCTCGACAAACTCTCAGGCTCCGGATTAGTGTCCAAAAGCAGTTACTACTATGGATTCTTCAGTGCTGCAATCAAATTACCAGCTGGTATATCATCTGGAGTTGTAGTTGCCTTCTATTTGTCTAATGCAGATAAATTCCCTCATAACCATGATGAGATTGATATCGAACTTCTTGGGCATGACAAGAGGAACGATTGGGTTATCCAAACAAATGTGTATGCCAATGGAAGCGTGAGCACTGGAAGAGAAGAAAAGTTCTACTTCTGGTTCGACCCGACAAAGCAGTACCATTACTATAGCATCTTGTGGAACAGTTATCATACAGTGTTCCTAGTGGACAACATTCCAGTGAGGGAATTCATACACGGGTCTGTTTTCCCATCAAAACCGATGTCGGTGTATGCAACAATATGGGATGGTTCAGAATGGGCCACACATGGTGGAAAATACCCTGTTGATTACAAGTATGCACCATTTGTTGTTTCATTCTCAGAGATGCAACTCGCTGGCTGCACTTCTGATCCATTAGCATGCTCTAAATCCACCCCTTCTTCTGGTGTAGACCCTGTTAATGGACCTCAATTTACCAAGCTATCCCCACAACAGATGGCAGCACTTGATTGGGCTAGAAAGAAGCTCATGTTTTACTCCTATTGTACTGACAAGAACAGATATAAAGTCATGCCACCAGAATGCCACTAA 921 0.4321 MALIWQLNLLFSPLIIICLLSNVVSSRTRPFTAPTVTPLTNSFPRVPIDPNFSNAFGASNIKLLANGTMATLALDKLSGSGLVSKSSYYYGFFSAAIKLPAGISSGVVVAFYLSNADKFPHNHDEIDIELLGHDKRNDWVIQTNVYANGSVSTGREEKFYFWFDPTKQYHYYSILWNSYHTVFLVDNIPVREFIHGSVFPSKPMSVYATIWDGSEWATHGGKYPVDYKYAPFVVSFSEMQLAGCTSDPLACSKSTPSSGVDPVNGPQFTKLSPQQMAALDWARKKLMFYSYCTDKNRYKVMPPECH* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3452 306 CDD GH16_XET 46 305 IPR016455 GO:0010411|GO:0016762|GO:0042546
Amo13g3452 306 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 269 305 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Amo13g3452 306 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 33-RELATED 1 306 - -
Amo13g3452 306 SUPERFAMILY Concanavalin A-like lectins/glucanases 49 305 IPR013320 -
Amo13g3452 306 Pfam Glycosyl hydrolases family 16 57 228 IPR000757 GO:0004553|GO:0005975
Amo13g3452 306 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 1 306 IPR044791 GO:0004553
Amo13g3452 306 PIRSF EndGlu_transf 13 306 IPR016455 GO:0010411|GO:0016762|GO:0042546
Amo13g3452 306 Gene3D - 33 305 - -
Amo13g3452 306 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 41 236 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3452 Amo-Chr13 116110928 116113588 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3452 1 306 Glycoside Hydrolase AT1G10550 60.252 3.31e-139 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3452 K08235 - gmx:100778993 488.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3452 13 116110928 116113588 Amo13g3452 13 116110928 116113588 ECH