Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3450 ATGGCGGATCCCGCCTCCTCTCCCGCCGTAACCCTAGAACCCAAACCCCAGCACACTGAATCACAACCTGATCCAGCTCCACCTTCCACATCCCTATCTCAATCTCCAGCTCCCGCAAACCCTAATCCCAATCCCACTCTGCTCTCCGCGCAACCGCCCGCGCCGCCGTTGCAGCAGCACCATCCCACCTTCTCCTACGTGCCTCCTCAGGTCTCCGCTGGACCTCCCTTCGCGCCTCCCGCCGCCCCCTCCTTCCGGCCGCTGCCTCCTCAGGCACCGCACTTCTCCCCGTTGCCAAATCCATCCGGAGGCGCCGCTCCGCCGAGCCTTGCCTACCAGAATCCGTCGATTCCACCTCCTGGTGTTAGCTCTGCGGCTGCAATGGCTCCCGGCGTCGCCTCTGCTGCCGGTGGCGTTGCGGTTCCGGTGTCTGTGCCGCACATGCAGCCAATGATGTCGTATCAGGTTCCTCCCGGCCAGCCCGCCATCCCAACCCTGAGACCGCCCTACGCGATGCCAAACGGTTACGCCGCTATCCCGGGTGCTCCTCAAACGGCTGTACCTCCCGCTGGAATGCCTCGTTATCCTCCTCCATATGGAACTATGGTTCGTCCTGTATATCCTCCTCGAGTACCTGGAGCGGTTAATGTTCTCCCGGTATCACGTCCCCCTGTTGCAGGGGTACCTCCAGTTCGCCCTATTATTCCTCCTGTTGTCAGACCTGTGGTTGCTCCTAGTGTTACTCCAGCTGAGAAGCCACAAATCACGGTTTATGTTGGCAAGATTGCACCTACTGTGGAAAATGATTTCATGCTTTCTATTCTTCAGTTATGTGGACCAGTTAAGAGCTGGAAACGTCCTCAGGATTTATCGAATGGAACGCCTAAAAGCTTTGGCTTTTGTGAGTTTGAGACTGATGAAGGGGTTCTTCGTGCCTTGCGTCTTCTTACTAAATTAAATATTGATGGGCAAGAGCTAATGCTGAACATCAATGAAACTACGAAAGAACATCTGAAGCGGTATGTTGCGAAAAAAACTGAAGATTCAAAGAAAAAAGAAACCCAGGTAGCAGGTGCTGAAAAAGATGATGAAGGTGCACAACCTTCTGATGGTGGTGGGAAATCTGATGCCGAGGACTCAAAGAAAGAGGATAGTGATTCACATAACAAGGAATCCCTTGATTTCGCTACCTTCGGCATTGTCACTGATGATGATAGGGAAGCTGATCGAGAGGCTTTGGAAAAGATTACGAACATGATAGAGGAGAGGTTGAAAACAAGACCTTTGCCTCCACCGCCTGCACAGACGCCTGGTGATGGCTCTGCAATAACTTCAGAACAACCAGCTAAAACAAGAGATGGAGATTCTGATGAGGCTATGGGGAGGAATGAAGGAAATGAAGATAAAACTGAAAAAGATGCAAACAGTGACATCAAACAAACTAGTGAACATGATAAGCCTGAGACCCCTGATAGAAGGCATGACAGGAGAAGCAGAGAGAGGGACCGAGATAGGGAACTAAAACGGGAAAAGGACAGGGAGCTTGAAAGATATGAACGAGAAGCAGAGAGGGAACGTATTAGGAAAGAAAGGGAACAAAGAAGGAGGATTGAGGATGCTGAGCGTCAGTATGAATCATGTTTGAAAGAGTGGGAGTATCGAGAAAGGGAGAAAGAGAAAGAGCGCCAGTATGAAAAAGACAAGGAAAAAGAAAGAGAACGCAAACGGAGAAAGGAGATACTATATGAAGAAGAAGATGAGGACGACGATTCAAGGAAGCGGTGGCGTAGAAGTGTATTAGAGGAGAAGAGAAAGAAGAGATTGCGTGAAAAGGAAGACGACTTGGTTGACAGACAAAGAGAAGAGGAAGAAATTGCCGAGGCCAAGAAGAAGGCAGAGGAGGATCAGCAACGGCAACAGCAGAGAGATGCACTGAAACTGTTATCTGACCATTCTATAAATGGTGGTGAAAAAGCCATGGCTACTGAAGAGGCTGCCAATGAAGTAAAAAATGTTGTTACAGAACACAATAATGCAGTTGATTATAATCATGAAGGCCATATAGGTGATGTCAATTCACTAAACGCTATGAATGATGAATCAGGCATGGCATCTGTCTCAGAAAATGATGCACGATCAAGTGCAAATGCTCCTGCAAAGAAGTTGGGATTTGGTCTAGTTGGGTCCGGAAAAAGAACAACTGTCCCTTCTGTTTTCCACGAGGAGGAGGATGATGATGCACACAAGGACAAAAAAATGAGGCCTTTGGTTCCAATTGATTATTCAACTGAGGAACTGCAAGCTGTTCAACCTACTGCCGCTGGGCCAACACCTCCAAATTTGGCTGCTGCTGCAGAATTTGCAAAGCGTATATCCAGTGCTAATCTCAAAGAAGAGAAGCTTGATGGAGAACGAGATAGAAGTAAGCGTTCAAGTGAGAAGTCTAATCACCGAGACAGGGACAGGAGTGATGAAGATGGCACCCACAACAGAGATGACCACAAGGAGAAAACTGACCGTGACAGAGATCGAGATCATGGATTGGACAAAGTAAAGACCTCGGATAACAAGAGACTCTTGGATGCAAAACAGTTAATTGATATGATTCCAAAGACCAAGGAGGAACTGTTCTCGTATGAGATAAACTGGGCAGTGTATGACAAGCATCAGTTGCACGATAGAATGAGACCGTGGATTTCAAAGAAGATCAAAGAGTTTTTGGGGGAAGAAGAAAATACATTGATAGATTACATTGTTTCCAGTACACAAGAACATGTGAAAGCATCCCAGATGCTAGAACGTCTTCAAATAATTTTAGATGAAGAAGCTGAAATGTTTGTTCTCAAGATGTGGAGGATGCTTATCTTTGAAATTAAGAAGGTAGAGACGGGGCTTGCTTTGAGGACGAAATGA 2913 0.4755 MADPASSPAVTLEPKPQHTESQPDPAPPSTSLSQSPAPANPNPNPTLLSAQPPAPPLQQHHPTFSYVPPQVSAGPPFAPPAAPSFRPLPPQAPHFSPLPNPSGGAAPPSLAYQNPSIPPPGVSSAAAMAPGVASAAGGVAVPVSVPHMQPMMSYQVPPGQPAIPTLRPPYAMPNGYAAIPGAPQTAVPPAGMPRYPPPYGTMVRPVYPPRVPGAVNVLPVSRPPVAGVPPVRPIIPPVVRPVVAPSVTPAEKPQITVYVGKIAPTVENDFMLSILQLCGPVKSWKRPQDLSNGTPKSFGFCEFETDEGVLRALRLLTKLNIDGQELMLNINETTKEHLKRYVAKKTEDSKKKETQVAGAEKDDEGAQPSDGGGKSDAEDSKKEDSDSHNKESLDFATFGIVTDDDREADREALEKITNMIEERLKTRPLPPPPAQTPGDGSAITSEQPAKTRDGDSDEAMGRNEGNEDKTEKDANSDIKQTSEHDKPETPDRRHDRRSRERDRDRELKREKDRELERYEREAERERIRKEREQRRRIEDAERQYESCLKEWEYREREKEKERQYEKDKEKERERKRRKEILYEEEDEDDDSRKRWRRSVLEEKRKKRLREKEDDLVDRQREEEEIAEAKKKAEEDQQRQQQRDALKLLSDHSINGGEKAMATEEAANEVKNVVTEHNNAVDYNHEGHIGDVNSLNAMNDESGMASVSENDARSSANAPAKKLGFGLVGSGKRTTVPSVFHEEEDDDAHKDKKMRPLVPIDYSTEELQAVQPTAAGPTPPNLAAAAEFAKRISSANLKEEKLDGERDRSKRSSEKSNHRDRDRSDEDGTHNRDDHKEKTDRDRDRDHGLDKVKTSDNKRLLDAKQLIDMIPKTKEELFSYEINWAVYDKHQLHDRMRPWISKKIKEFLGEEENTLIDYIVSSTQEHVKASQMLERLQIILDEEAEMFVLKMWRMLIFEIKKVETGLALRTK* 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3450 970 Gene3D PWI domain 850 966 - -
Amo13g3450 970 MobiDBLite consensus disorder prediction 795 850 - -
Amo13g3450 970 Coils Coil 554 588 - -
Amo13g3450 970 MobiDBLite consensus disorder prediction 12 28 - -
Amo13g3450 970 MobiDBLite consensus disorder prediction 344 539 - -
Amo13g3450 970 MobiDBLite consensus disorder prediction 400 422 - -
Amo13g3450 970 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 36 970 - -
Amo13g3450 970 SMART pwi_2 887 960 IPR002483 GO:0006397
Amo13g3450 970 Coils Coil 611 642 - -
Amo13g3450 970 MobiDBLite consensus disorder prediction 344 391 - -
Amo13g3450 970 MobiDBLite consensus disorder prediction 72 104 - -
Amo13g3450 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 255 333 IPR000504 GO:0003723
Amo13g3450 970 SUPERFAMILY PWI domain 892 958 IPR036483 GO:0006397
Amo13g3450 970 SMART rrm1_1 256 329 IPR000504 GO:0003723
Amo13g3450 970 Coils Coil 501 550 - -
Amo13g3450 970 CDD RRM_RBM25 256 338 IPR034268 -
Amo13g3450 970 SUPERFAMILY RNA-binding domain, RBD 229 335 IPR035979 GO:0003676
Amo13g3450 970 Gene3D - 249 364 IPR012677 -
Amo13g3450 970 MobiDBLite consensus disorder prediction 450 539 - -
Amo13g3450 970 MobiDBLite consensus disorder prediction 554 594 - -
Amo13g3450 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 257 326 IPR000504 GO:0003723
Amo13g3450 970 Pfam PWI domain 894 957 IPR002483 GO:0006397
Amo13g3450 970 ProSiteProfiles PWI domain profile. 874 970 IPR002483 GO:0006397
Amo13g3450 970 MobiDBLite consensus disorder prediction 29 59 - -
Amo13g3450 970 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 36 970 - -
Amo13g3450 970 MobiDBLite consensus disorder prediction 1 117 - -
Amo13g3450 970 MobiDBLite consensus disorder prediction 608 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3450 Amo-Chr13 116096429 116101968 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3450 K12822 - gmx:100809428 1020.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3450 13 116096429 116101968 Amo13g3450 13 116096429 116101968 ECH