Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3448 ATGGACCAACAACGCGAACCTAACTCTAATTCGCAGAAGAAGCGCCGTCTCGACCTTGACTGGGAAGCTCTTCTCCCCCGCCACGGCGACGCACCGCCGCCGGAGATCGTGGTCAAGCCTATGGCCTCCGGTAATTCCTTCTCCCTCGACGATGAATTTAGATACTWMACCGACCACCAGCTCATCGAAAGCATTCRGAGCAAGAAGCAAACCTTGAGAATCCATCTCCCGAWGTTGAAGGATGGAGGTGTCAAGATTCTCGATACCATCARGCGACAAGAGGAAGAGCTAGCTCGCCGGARAAGGACGCCACACGTCCAGGAAGTTGTTGATGCTGATGATAAACCGAGAAATGCTACTGGCTCAAGTGATGTTGGTGTGTCTAGTGACTCGAGACAGAAGAGTATCTCATCTCAAGTGCCAGTTCAACCCTCATTTGCATCTTGTTTTTCTAAGAAATTGGAAGGAGTTGATACTGATTGTATGGTGGTTGATACATCTGGAAAAGAGACTTCACATTTCAGACATTGCAATAACGAGACAATAAAAGACAAGGGAGAACCTAAAGGAGGAAGGAGGCTTAGATCATCTTCTAGAAATGAGCCATTTCAATGCGCTACCAACCTTTCCAAGAATGATGCTTTTAATGATGGTAAAAAATCCAGAGCAGCTTCCAGTATCTCTGCTGCGAACATTGGGAAAAGCCTGTCAAGATTCTTTGCTCCAGAAGTGAAGGAAACTAGACAGGCAATTCAATCAGATGACTCGAGGTCCAAGAAGGGTCAGCCCATTGTCCTTGATGATGATGATGATGATGATGAACCTTATGTGCTAGAGAAGACAGAGCAAGAAAAAAAACTTGCTGAATGTGCGAAAGATGCTAAGATGTATTACCCATCAAGTGACGATCCTGAGTCTGTTGAAATTTGTTACTCAGACATAGATTGCCTTGCTCCTGAAAGCTATTTGACTTCAACTATTATGAATTTTTACATACGATATTTGAAGCAGCAAGCATCTTTGGCAAATAGATCGTTATCCGAGTATCATTTTTTTAATACATATTTCTACAAGAAGCTTCAGGAGGCTGTTTCGGTTAAGCAAAGTGACAGAGCAACATTCTTTGTCAAATTCAGAAGGTGGTGGAAGGGTGTAAATATATTTCAGAAGACCTATGTTTTGATTCCAGTACACGAGGATCTTCATTGGAGCTTGATCATTATTTGTATCCCGGATAAAGGTGATGAATCAGGGCCAATCATACTTCATCTGGATTCTYTGAGTCTTCACTCTAGCAGATCACTATTTGATAACATCAAAAGCTTTCTGATAGAAGAAAAGAACTATTTGGATCAGGAACATATGTCATCAGATGTTTCAATTGCAGACAGGATATGGAATTGCCTTCCCCGTCGAATTGAAACGCAAGTTATCACGGTTCCCCAACAAAGGAATGATTATGATTGTGGCCTTTTTGTATTGTACTTTATTGAACGTTTCATTGAAGAGGCACCAGAAAGACTCAAAAAGAAAAATTTGGCTATGTTTGGCAAGCAGTGGTTCAAACCTTCAGAAGCATCCAGTTTGAGAGTGAAAATCCGTAAACTGCTCGTGGAAGAACTTACAAATTCAATTGACCGTAACTATTCTCCAAAGTGTTCTCCTTCATCATTTTCGGGCACAAGTCCAACTGAATGTGCTGAGACAGCCAAGGACCCTGATCTAACCACCGCATGA 1737 0.422 MDQQREPNSNSQKKRRLDLDWEALLPRHGDAPPPEIVVKPMASGNSFSLDDEFRYXTDHQLIESIXSKKQTLRIHLPXLKDGGVKILDTIXRQEEELARRXRTPHVQEVVDADDKPRNATGSSDVGVSSDSRQKSISSQVPVQPSFASCFSKKLEGVDTDCMVVDTSGKETSHFRHCNNETIKDKGEPKGGRRLRSSSRNEPFQCATNLSKNDAFNDGKKSRAASSISAANIGKSLSRFFAPEVKETRQAIQSDDSRSKKGQPIVLDDDDDDDEPYVLEKTEQEKKLAECAKDAKMYYPSSDDPESVEICYSDIDCLAPESYLTSTIMNFYIRYLKQQASLANRSLSEYHFFNTYFYKKLQEAVSVKQSDRATFFVKFRRWWKGVNIFQKTYVLIPVHEDLHWSLIIICIPDKGDESGPIILHLDSLSLHSSRSLFDNIKSFLIEEKNYLDQEHMSSDVSIADRIWNCLPRRIETQVITVPQQRNDYDCGLFVLYFIERFIEEAPERLKKKNLAMFGKQWFKPSEASSLRVKIRKLLVEELTNSIDRNYSPKCSPSSFSGTSPTECAETAKDPDLTTA* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3448 578 MobiDBLite consensus disorder prediction 100 138 - -
Amo13g3448 578 Pfam Ulp1 protease family, C-terminal catalytic domain 322 527 IPR003653 GO:0006508|GO:0008234
Amo13g3448 578 Gene3D - 298 538 - -
Amo13g3448 578 MobiDBLite consensus disorder prediction 248 266 - -
Amo13g3448 578 MobiDBLite consensus disorder prediction 552 566 - -
Amo13g3448 578 MobiDBLite consensus disorder prediction 247 274 - -
Amo13g3448 578 ProSiteProfiles Ubiquitin-like protease family profile. 307 500 IPR003653 GO:0006508|GO:0008234
Amo13g3448 578 MobiDBLite consensus disorder prediction 552 578 - -
Amo13g3448 578 MobiDBLite consensus disorder prediction 121 138 - -
Amo13g3448 578 MobiDBLite consensus disorder prediction 175 196 - -
Amo13g3448 578 PANTHER UBIQUITIN-LIKE PROTEASE 4-RELATED 51 546 - -
Amo13g3448 578 SUPERFAMILY Cysteine proteinases 297 540 IPR038765 -
Amo13g3448 578 Gene3D - 349 477 - -
Amo13g3448 578 PANTHER UBIQUITIN-LIKE PROTEASE 4 51 546 - -
Amo13g3448 578 MobiDBLite consensus disorder prediction 175 202 - -
Amo13g3448 578 MobiDBLite consensus disorder prediction 100 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3448 Amo-Chr13 116067558 116073921 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3448 K16287 - gmx:100790705 614.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3448 13 116067558 116073921 Amo13g3448 13 116067558 116073921 ECH