Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3413 ATGGATACATTGTTATTGTTACTACTAGTTCTTATGGTTGCCCCACCATGCCTAAACATGGTAGAGAGTCGCAAGGCTCCAATTTCGGACTACTTTGAGTACAGTGCTGTTAACTGCAGAGCTTACAGTGCATCGCTCACAGATTTTGGTGGTGTTGGGGATGGAACAACTTTGAACACAAAGGCTTTTCAATCAGCCATAGATCATATGAGCCAGTTCTCATCAACTGGAGGCTCTCAACTCTTTGTTCCTCCAGGAAGATGGTTAACCGGTAGCTTCAATCTCACTAGCCACTTCACTCTATTCCTACACCAAGATGCTGTCATCCTTGCCTCTCAGGATGAGAGTGACTGGCCACTCATTGATCCCTTGCCGTCTTATGGCCGAGGGAGGGATGCGCAAGGTGGAAGGTATAGCAGTCTAATTTTTGGAACCAACCTTACAGATGTGATCATCACTGGGGACAATGGTACAATAGATGGACAAGGCGATGTTTGGTGGAAAAAATTCCACAAGGGGGATCTCAGTTATACTAGGCCGTACCTTATTGAAATAATGTATTCAGAGAATGTTCAGATATCTCATCTAACTTTGGTCAATTCTCCTTCATGGAATGTTCATCCTGTATATAGCAGCAATATTGTTGTTCAAGGCATCACAATACTTGCTCCAGTTAATTCACCAAATACTGATGGAATCAACCCTGACTCATGCACAAACACAAGAATTGAGGACTGCTACATTGTTTCTGGGGATGATTGTGTGGCGGTTAAGAGTGGTTGGGATGAGTATGGTATAGCATATGGAATGCCAACGAAACAACTAGCAATCCGGCGCCTGACATGCATTTCACCAACCAGCGCTGTGATAGCATTGGGGAGTGAAATGTCCGGTGGGATTGAGGATGTGAGGGCTGAGGACATTGTAGCCATCAACTCAGAATCAGGTGTTAGGATCAAAACTGCTGTCGGAAGAGGAGGCTATGTTAAGGACATATATGTGAGAAGGATGACTATGAATACCATGAGATGGGCATTTTGGATGACAGGAAATTATGGTTCTCATGCTGACAACAACTATGATCCCAATGCACTTCCTCTCATTCAAAACATCAATTACCGGGACATGGTTGCTCAGAATGTGACTATGGCAGCAAGATTGGAGGGTATATCCAATGCTCCATTCACTGGCATATGTATATCCAATGTGACTATTCAACTATCAAAGAAACCTTACAAAGTTCAATGGAATTGCACCAATGTGGCTGGGATTTCTAGTGGTGTGACTCCAGAGCCATGTATGCTGTTGCCAGATCAGGGACCGGAGAAGATTGGGGTATGTACCTTCCCAGAAGATGGTTTGCCCATAGATGATGTCAAGTTCCAAACTTGCACTTATGCAAGGCATTTATGA 1413 0.4395 MDTLLLLLLVLMVAPPCLNMVESRKAPISDYFEYSAVNCRAYSASLTDFGGVGDGTTLNTKAFQSAIDHMSQFSSTGGSQLFVPPGRWLTGSFNLTSHFTLFLHQDAVILASQDESDWPLIDPLPSYGRGRDAQGGRYSSLIFGTNLTDVIITGDNGTIDGQGDVWWKKFHKGDLSYTRPYLIEIMYSENVQISHLTLVNSPSWNVHPVYSSNIVVQGITILAPVNSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLAIRRLTCISPTSAVIALGSEMSGGIEDVRAEDIVAINSESGVRIKTAVGRGGYVKDIYVRRMTMNTMRWAFWMTGNYGSHADNNYDPNALPLIQNINYRDMVAQNVTMAARLEGISNAPFTGICISNVTIQLSKKPYKVQWNCTNVAGISSGVTPEPCMLLPDQGPEKIGVCTFPEDGLPIDDVKFQTCTYARHL* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3413 470 Pfam Glycosyl hydrolases family 28 137 422 IPR000743 GO:0004650|GO:0005975
Amo13g3413 470 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 6 467 - -
Amo13g3413 470 Gene3D - 28 427 IPR012334 -
Amo13g3413 470 SUPERFAMILY Pectin lyase-like 38 463 IPR011050 -
Amo13g3413 470 PANTHER PECTIN LYASE-RELATED 6 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3413 Amo-Chr13 114318395 114320887 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3413 32 469 Glycoside Hydrolase AT4G23500 75.114 0.0 704
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3413 - - gmx:100785841 835.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3413 13 114318395 114320887 Amo13g3413 13 114318395 114320887 ECH