Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3411 ATGGCTGAGGTTCAGATGGGGGAGTCTGAGACTTTTGCATTCCAGGCTGAGATCAACCAACTGCTTAGCTTGATCATCAACACCTTCTACAGCAACAAGGAGATCTTCCTTCGTGAGCTCATTAGCAATGCTTCCGACGCACTGGACAAAATCAGATTCGAGAGCTTGACAGAGAAATCGAAGCTTGATGCTCAGCCTGAGCTCTTCATTAGGATTGTTCCTGATAATACAAATAAGACCCTCTCTGTTATAGACAGTGGCTCTGGCATGACCAAAGCTGAGTTGGTGAATAATCTGGGGACAATAGCGAGGTCTGGCACGAAGGAGTTCATGGAAGCACTGCAGGCGGGTGCAGATGTTAGCATGATTGGGCAATTCGGTGTTGGCTTCTACTCTGCCTATCTTGTTGCCGATAAGGTCATTGTCACCACCAAGCACAACGACGACGAGCAATATGTCTGGGAGTCTCAGGCCGGTGGATCCTTCACCGTCACTAGAGACCTCCAAGGTGAACCCCTCGGTAGAGGCACCAAGATCACCCTCTTCCTCAAAGATGATCAGTTGGAATACTTGGAGGAGAGGAGAATCAAGGATTTGGTGAAGAAGCACTCGGAATTCATCAGCTATCCTATATATCTATGGACGGAGAAGACCACGGAGAGGGAGGTGAGCGACGACGAGGACGAAGAATACTCCAAGAAGGAGAAGGAAGAGGAAGGGGATGTGGAGGAGGTGGATGAGGACAAATCAAAAGAGAAGAAGAAGAAGAAAGTGAAGGAAGTGAGGCATGAGTGGCAGCAGATTAACAAGCAGAGACCGATTTGGCTGAGGAAGGCAGAGGAAGTAACGAGGGAGGAATATGCAGCATTCTACAAGAGCCTCACCAATGACTGGGAGGACCATCTCGCAGTGAAGCACTTCTCCGTGGAAGGCCAGCTGGAGTTCAAGGCCATTCTCTTCGTTCCAAGAAGAGCACCCTTTGATCTCTTTGACACTAGAAAGAAGCTCAACAATATCAAACTCTATGTGAGGAGGGTCTTCATCATGGACAATTGTGAGGAACTCATCCCTGAGTACCTCGGTTTCGTGAAGGGCATCGTGGACTCCGATGATCTCCCACTCAACATCTCCCGCGAGACGCTTCAGCAGAACAAGATTCTCAAAGTCATCAGGAAGAATTTGGTGAAGAAATGCATTGAGATGTTCTTTGAGATTGCGGAGAACAAGGATGACTACAACAAATTCTACGATGCATTCTCCAAGAACATCAAGCTTGGGATTCATGAGGATAGCCAGAACAGAGCCAAACTGGCAGAGCTTCTTAGGTACCATTCAACCAAGAGTGGTGATGAGATGACAAGCCTCAAGGACTACGTCACCAGGATGAAGGAGGGTCAGCAGTCTATATACTACATCACCGGTGAGAGCAAGAAGGCTGTGGAGAATTCACCGTTCCTCGAGAGGCTTAAGAAGAGGGGCTATGAGGTGTTGTTCATGGTGGACGCAATTGATGAGTATGCTGTTACTCAGCTCAAGGAGTATGACGGGAAGAAGCTTGTCTCTGCAACCAAGGAAGGGCTGAAGCTGGAAGACGAGACGGAAGAAGAGAAGCAAAAGAGGGAGGAGAAGAACAAGTCATTCGAGAATCTGTGCAAGACAATGAAGGAGATTCTTGGGGACAGGGTGGAGAAGGTGGTTGTGTCTGATAGGATTGTGGACTCGCCGTGTTGCTTGGTGACGGGGGAATATGGATGGAGTGCAAACATGGAGAGGATCATGAAGGCACAGGCTCTCAGGGACAACACAATGAGCTCGTACATGAGCAGCAAGAAGACTATGGAGATCAACACTGAGAATGGGATCATGGAGGAGCTCAGGAAAAGGGCTGAGACTGACAAGAACGACAAGTCCGTCAAGGATTTGGTACTGCTCCTCTATGAGACGGCCCTGTTAACGTCCGGTTTCAGCCTCGACGATCCCAACTTGTTTGCGTCGAGGATCCACAGGATGCTCAAGTTGGGTTTGAACATCGAGGAGGGTGAGGCTGCTGAAGATGCAAACATGCCACCCCTTGAAGAGGAAGCAAACGAGGAGAGCAAGATGGAAGAGGTTGACTAA 2118 0.4887 MAEVQMGESETFAFQAEINQLLSLIINTFYSNKEIFLRELISNASDALDKIRFESLTEKSKLDAQPELFIRIVPDNTNKTLSVIDSGSGMTKAELVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVADKVIVTTKHNDDEQYVWESQAGGSFTVTRDLQGEPLGRGTKITLFLKDDQLEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEREVSDDEDEEYSKKEKEEEGDVEEVDEDKSKEKKKKKVKEVRHEWQQINKQRPIWLRKAEEVTREEYAAFYKSLTNDWEDHLAVKHFSVEGQLEFKAILFVPRRAPFDLFDTRKKLNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSDDLPLNISRETLQQNKILKVIRKNLVKKCIEMFFEIAENKDDYNKFYDAFSKNIKLGIHEDSQNRAKLAELLRYHSTKSGDEMTSLKDYVTRMKEGQQSIYYITGESKKAVENSPFLERLKKRGYEVLFMVDAIDEYAVTQLKEYDGKKLVSATKEGLKLEDETEEEKQKREEKNKSFENLCKTMKEILGDRVEKVVVSDRIVDSPCCLVTGEYGWSANMERIMKAQALRDNTMSSYMSSKKTMEINTENGIMEELRKRAETDKNDKSVKDLVLLLYETALLTSGFSLDDPNLFASRIHRMLKLGLNIEEGEAAEDANMPPLEEEANEESKMEEVD* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3411 705 CDD HATPase_Hsp90-like 19 207 - -
Amo13g3411 705 PRINTS 90kDa heat shock protein signature 98 115 IPR020575 -
Amo13g3411 705 PRINTS 90kDa heat shock protein signature 175 192 IPR020575 -
Amo13g3411 705 PRINTS 90kDa heat shock protein signature 123 145 IPR020575 -
Amo13g3411 705 PRINTS 90kDa heat shock protein signature 193 211 IPR020575 -
Amo13g3411 705 PRINTS 90kDa heat shock protein signature 10 30 IPR020575 -
Amo13g3411 705 PRINTS 90kDa heat shock protein signature 31 53 IPR020575 -
Amo13g3411 705 PRINTS 90kDa heat shock protein signature 80 97 IPR020575 -
Amo13g3411 705 PANTHER HEAT SHOCK PROTEIN 90-1 1 704 - -
Amo13g3411 705 Gene3D - 438 524 - -
Amo13g3411 705 Gene3D - 525 676 IPR037196 -
Amo13g3411 705 PIRSF HSP90_HTPG 1 705 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Amo13g3411 705 SUPERFAMILY HSP90 C-terminal domain 549 671 IPR037196 -
Amo13g3411 705 Hamap Chaperone protein HtpG [htpG]. 7 672 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Amo13g3411 705 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 32 186 IPR003594 -
Amo13g3411 705 MobiDBLite consensus disorder prediction 681 705 - -
Amo13g3411 705 SUPERFAMILY Ribosomal protein S5 domain 2-like 271 525 IPR020568 -
Amo13g3411 705 Gene3D - 269 437 - -
Amo13g3411 705 SMART HKATPase_4 32 187 IPR003594 -
Amo13g3411 705 Coils Coil 530 550 - -
Amo13g3411 705 ProSitePatterns Heat shock hsp90 proteins family signature. 30 39 IPR019805 GO:0005524|GO:0006457|GO:0051082
Amo13g3411 705 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 1 704 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Amo13g3411 705 Gene3D - 2 234 IPR036890 -
Amo13g3411 705 MobiDBLite consensus disorder prediction 685 705 - -
Amo13g3411 705 MobiDBLite consensus disorder prediction 223 253 - -
Amo13g3411 705 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 10 218 IPR036890 -
Amo13g3411 705 Pfam Hsp90 protein 189 701 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3411 Amo-Chr13 114311728 114314578 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3411 K04079 - cit:102616579 1176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3411 13 114311728 114314578 Amo13g3411 13 114311728 114314578 ECH