Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3401 ATGCCTTCCTCAGTTCGCAGGCTCGCTATGGCAGCAGCATCCAGCTCCCTCTCACTCAAGCAGGGGCTCTTACTTCGCCCTTCGCATACCAATCCTCTCACCCGACCTCGTCCTTCTTCCACTTCCCTCCCTTCCAGAAGCTTCCGCAGATGCTACGCCGCTTTCGCCAACGAGAATCGCGAGTACGTCATCGTTGGGGGCGGAAATGCCGCGGGATATGCTGCTCGCACCTTCGTCGAACACGGCATGGCCGATGGTCGTCTTTGTATTGTCACCAAAGAGGCATATGCGCCTTACGAGCGTCCTGCACTCACAAAAGCGTATTTGTTTCCACCGGATAAGAAGCCTGCGCGCCTTCCTGGTTTTCACACCTGTGTTGGATCGGGTGGAGAAAGGCAGACTCCAGAGTGGTATCAAGAGAAGGGGATAGAGATGTTGTATCAAGATCCAGTCAAGGATATTGATATTGAAAAGCAAACTTTGACAACTAATTCTGGAAAACATCTGAAGTATGGCTCACTTATAATTGCTACAGGGAGTTCAGCCTCGAGATTTCCGGAGAAAATTGGGGGAAACCTACCTGGCGTTCACTATATCCGGGAGGTTGCAGATGCTGATGCACTGATTTCATCATTGGGAAAAGCAAAAAAGGTTGTAGTTGTTGGAGGTGGATATATAGGAATGGAGATTGCTGCTGCAACAGTTGCTTGGAAACTTGATACAACAATCATATTTCCCGAGGATCATCTCTTGCAAAGACTGTTCACTCCTTCGCTTTCCCGGAGATATGAGGAACTCTACCAAAAGAATGGTGTCAAAATATTGAAGGGTGCCTCCATAAAAAATTTGGAAGCTGGCTCTGACGGACATGTAGCTGGTGTCAAACTTGGAGATGGATCTGTTGTAGAAGCTGATACGGTAATTGTAGGCATTGGAGCAAAACCTGCTGTGAGTCCCTTTGAGCGGGTGGGCTTGAATACAGAAGTTGGTGGATTACAGGTTGATGGTCAGTTCCGGACTGGCATTCCTGGAATCTTTGCTATCGGTGATGTCGCAGCTTTCCCTTTAAAGATATATAACCGTACTGCTCGAGTGGAACATGTAGATCATGCTCGTCGCTCAGCACAGCACTGTGTAAAATCATTACTCACTGCACAAACTCACACGTACGATTACCTTCCATACTTCTACTCAAGGGTGTTTGAATATGAAGGGAGCCCCAGAAGAGTATGGTGGCAGTTCTTCGGAGACAATGTCGGAGAAACAGTTGAAATTGGAAACTTTGATCCTAAAGTAGCTACCTTCTGGATTGAATCTGGTAAGCTAAAAGGAGTGCTGCTTGAAAGTGGGAGCCCTGAGGAATTTCAGCTCCTGCCTAAACTAGCCAGAAATCAACCCGTAATTGATAAGGCGAAGCTTCAAAGCGCATCTTCTGTTGAGGAGGCCCTAGACATTGCTTGGAGATCCTTGCAAGTTGAAGCTACAGTCTAA 1491 0.4748 MPSSVRRLAMAAASSSLSLKQGLLLRPSHTNPLTRPRPSSTSLPSRSFRRCYAAFANENREYVIVGGGNAAGYAARTFVEHGMADGRLCIVTKEAYAPYERPALTKAYLFPPDKKPARLPGFHTCVGSGGERQTPEWYQEKGIEMLYQDPVKDIDIEKQTLTTNSGKHLKYGSLIIATGSSASRFPEKIGGNLPGVHYIREVADADALISSLGKAKKVVVVGGGYIGMEIAAATVAWKLDTTIIFPEDHLLQRLFTPSLSRRYEELYQKNGVKILKGASIKNLEAGSDGHVAGVKLGDGSVVEADTVIVGIGAKPAVSPFERVGLNTEVGGLQVDGQFRTGIPGIFAIGDVAAFPLKIYNRTARVEHVDHARRSAQHCVKSLLTAQTHTYDYLPYFYSRVFEYEGSPRRVWWQFFGDNVGETVEIGNFDPKVATFWIESGKLKGVLLESGSPEEFQLLPKLARNQPVIDKAKLQSASSVEEALDIAWRSLQVEATV* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3401 496 PRINTS Pyridine nucleotide disulphide reductase class-I signature 305 319 - -
Amo13g3401 496 PRINTS Pyridine nucleotide disulphide reductase class-I signature 345 352 - -
Amo13g3401 496 PRINTS Pyridine nucleotide disulphide reductase class-I signature 217 242 - -
Amo13g3401 496 PRINTS Pyridine nucleotide disulphide reductase class-I signature 61 83 - -
Amo13g3401 496 PANTHER MONODEHYDROASCORBATE REDUCTASE, CHLOROPLASTIC/MITOCHONDRIAL 38 495 - -
Amo13g3401 496 Gene3D - 185 312 IPR036188 -
Amo13g3401 496 Gene3D - 395 481 IPR016156 GO:0016491|GO:0050660
Amo13g3401 496 Pfam Pyridine nucleotide-disulphide oxidoreductase 61 375 IPR023753 GO:0016491
Amo13g3401 496 PRINTS FAD-dependent pyridine nucleotide reductase signature 304 320 - -
Amo13g3401 496 PRINTS FAD-dependent pyridine nucleotide reductase signature 171 189 - -
Amo13g3401 496 PRINTS FAD-dependent pyridine nucleotide reductase signature 330 352 - -
Amo13g3401 496 PRINTS FAD-dependent pyridine nucleotide reductase signature 217 235 - -
Amo13g3401 496 PRINTS FAD-dependent pyridine nucleotide reductase signature 63 82 - -
Amo13g3401 496 PANTHER APOPTOSIS-INDUCING FACTOR 1 38 495 - -
Amo13g3401 496 Gene3D - 63 378 IPR036188 -
Amo13g3401 496 MobiDBLite consensus disorder prediction 26 45 - -
Amo13g3401 496 SUPERFAMILY FAD/NAD(P)-binding domain 57 357 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3401 Amo-Chr13 113624265 113629149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3401 162 394 Acyl Lipid Metabolism Gene Families AT1G48030 27.059 8.62e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3401 K08232 - gmx:100819919 821.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3401 13 113624265 113629149 Amo13g3401 13 113624265 113629149 ECH
Amo13g3401 13 113624265 113629149 Amo03g2410 03 102869562 102874733 hybridization