Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3307 ATGAGGATGGACTATCTACACCACAAGTTTCCCTTAAACCACAAGAACCTTCTCCTCAAATTGCTTCTCTCTTTCTTCTTCTTTGGTCTCGCTTTCCGTTTGCTCTTCTTCCATGCCCTCTCTCCTCCTGTTTCCCCTGTTCTGGAATCCCCTTTTCCTGAGAAAACCACTCTCCCTGTTCCAGAACCCCATCACCCACCTCCTCTTCCGTCATTGCTGCTTCCTCAGAATCCACCTGTTTTAGAGGAACATGTTCCTGATGATGTTCCAGAACAAGCTCCTGAAGATGACCCCGAACATACTCCAGAGGAGTTTCAAGAACATGTTCCTGAAAGTGAAGATCAAGTGGAGACTCACACAGACACAGAGGAATGTGATTATTTTAGTGGGGACTGGGTTCCCAATCCTTTTGGACCATTGTATACCAATGAAACCTGCAGCCACATTGAATCTCATCAGAATTGTTTGAAGAATGGAAGGCCTGATAGAGAATTTCTGTATTGGAGATGGGCTCCAAGAGGCTGTGAGTTACCCCTGTTTGATGCAGGGAAGTTTCTCAACATGATGCGTGGCAAAGTGTGGGCGTTGATTGGTGATTCCATATCCCGCAATCATGTGCAGTCGTTGATATGCATTCTTTCAACGGTAGAGCAAGCTGTTATGTACTACCATGATGAGGAATACAAGTCTAAAAGCTGGAACTTCCCCTCATACAACTTCAATGTGTCAGTTATTTGGTCACCATACCTTGTGGAAGCTGCTATATATGAAGACATGAACGGCGTTTCGAGTTCTGAAGTTGAGATACAACTAAACAAACTGGATAGTAAATGGGTGGATCAATATATGGACTTTGACTACATTATATTTTCGACAGGGAAATGGTTTCTCAAAGCCGCGATCTACTATGAAAATGACACCATAATCGGGTGTCACTCCTGTCCCAAAAGGAACCTGACAGAACTCGGATTCAACTTTGCTTATCGCAAAGCTCTAAAATCTGTCTTCAACTTCATAGTGTCTTCCAATCACAGAGGCTTGATATTTTTCAGGACATTCACTCCTGATCATTTCGAAAATGGAGAGTGGTTCAGCGGTGGAACTTGCAAAAGAACAGCACCAATCAAAGAAGGTGAGATGGAAATGAAGGAGCTGAACATGATGCTCCGGAACATCGAGTTAGAGGAATTTGCAAAGGCAAGGGATGAGGCTTCAAAGAATGGAGTGAATCTTAAGATAGTTGATTTTGCTGGACTTTCACATTTGAGACCTGATGGACACCCTGGTCCATATAGGGAGTTTCATCCATTTGCAAAGGGAAAAAATTCCAAAGTTCAGAATGATTGTTTGCATTGGTGCTTGCCTGGCCCAATAGACTCTTGGAATGACATATTAATGCAGATGGTTCTCAATGGATGA 1419 0.432 MRMDYLHHKFPLNHKNLLLKLLLSFFFFGLAFRLLFFHALSPPVSPVLESPFPEKTTLPVPEPHHPPPLPSLLLPQNPPVLEEHVPDDVPEQAPEDDPEHTPEEFQEHVPESEDQVETHTDTEECDYFSGDWVPNPFGPLYTNETCSHIESHQNCLKNGRPDREFLYWRWAPRGCELPLFDAGKFLNMMRGKVWALIGDSISRNHVQSLICILSTVEQAVMYYHDEEYKSKSWNFPSYNFNVSVIWSPYLVEAAIYEDMNGVSSSEVEIQLNKLDSKWVDQYMDFDYIIFSTGKWFLKAAIYYENDTIIGCHSCPKRNLTELGFNFAYRKALKSVFNFIVSSNHRGLIFFRTFTPDHFENGEWFSGGTCKRTAPIKEGEMEMKELNMMLRNIELEEFAKARDEASKNGVNLKIVDFAGLSHLRPDGHPGPYREFHPFAKGKNSKVQNDCLHWCLPGPIDSWNDILMQMVLNG* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3307 472 Coils Coil 375 395 - -
Amo13g3307 472 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 24 9 471 - -
Amo13g3307 472 Pfam PMR5 N terminal Domain 123 176 IPR025846 -
Amo13g3307 472 MobiDBLite consensus disorder prediction 95 123 - -
Amo13g3307 472 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 9 471 IPR029962 GO:0016413
Amo13g3307 472 MobiDBLite consensus disorder prediction 56 75 - -
Amo13g3307 472 MobiDBLite consensus disorder prediction 56 123 - -
Amo13g3307 472 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 177 468 IPR026057 GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3307 Amo-Chr13 105885194 105888885 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3307 - - gmx:100816814 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3307 13 105885194 105888885 Amo13g3307 13 105885194 105888885 ECH
Amo13g3307 13 105885194 105888885 Amo03g2318 03 97119492 97123005 hybridization