Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3287 ATGGAGACGATCAAAGGGAAGAGTGAAAGCGAATTGGTGAGGCTGTGCATAGAAGCTGCGTGCGAGAGCAGAGAGAGCATCCAGAAATGGCGGATGCAGAGGCGGACCTTCGACCATCTCCCTTCTCATCTCGCCGACGGCCTCATCCGGCGCCTGGTGTCCCGGCGGCTCCTGTACCCGTCGCTTCTAGAAGTGTTCAAACAGAGCGCCGAAGAAGTTGATTTGAGAGGCGTTTACAACGTGGATGCAGAATGGCTTGCGTACTTGGGAGCGTTTCGGCAGTTGCGGTATTTGAACCTTTCCGATTGCCACAGAATCACTTCTTCTGCTCTTTGGCCTATTTCTGGAATGGCTTCTGTTAACCACTTGCACCTCTCTAACTGCTCCAAGCTCAACGACGCTGCTATTCATCACATTCTCTCTCTCTCTAACCTCCAGAAATTACAAATCTCGCAAACAAGTGTCACCGCCAAAGGCATCAAACTTCTCGCCTCCCTTAAAAACCTCTCTCTTCTCGACTTAGGCGGCTTACCTGTTGATGACGTCTCCTTAACTTCTTTACAGGTACTGAAAAAGTTAGAATATCTTGATCTATGGGGTAGTAAGGTATCAAATGAAGGGGCTAACATCCTCAATAACTTCCCCAAGTTAACCTATCTAAATCTTGCTTGGACTAATGTCACAAAATTGCCTAATTTATCATCTATTGAATGCCTCAACATGAGTAATTGTACTATTGATTCAATACTTGAAGATGATGAAGCTCCTTTGGCAAAACTTATTCTCTCCGGTGCTACATTCAGGAGCGAATCGGAGTTTCTCTTACACGCCAATACAAACTTTTTGTCCTCTCTCGATGTAGCTCATTCTGGCCTTAGTAAATTCTTCTTCTTGAGTAAATTGAAAGTGATAGAACAGCTCAATCTCAGCTCTTGCATGGTCACTGATGATTCGATTGAAATGATCGCGGGTGTTGGTGTAAGCTTGAAGAGTTTGAATCTGACTGGTACTAAGGTCAGCTCCGCAGGCATAGGGATTTTAGCTGGACATGTCTCCAATCTTGAGATGCTTTCATTATCTCAGACACTGGTGGATGATACTGCCATCTTGTATATCAGCATGATGCCTTCTTTAAAGGTTCTTGACCTTAGCAATACAATGGTGAAAGGATGCTTACCACAGGAAAATACCGACCACGGCTCACCACACTCTCTAACAGCTCTACAAAGTCTTAAACAATTAGAAAGCTTGAATTTGGAATACACACGAGTTAGGGATGAAGCTTTAAGCCCTTTGTCAAGCTTCAAAGAGCTGAGATATTTATTTCTTAAAAGTGCGTCACTTGCAGACATCTCACTTTACTATTTATCATCAATTCCTAAATTGACTAGTCTTAGTATTTGTGATGCGGTATTGACAAATTATGGGCTTCATATGTTTAAACCTCCTCAAACACTGAAACTAATGGACCTCCGAGGTTGTTGGCTCTTAACTGAGGACACTATCATGTCGTTCTGTAGAATTCATCCACAAATTGAAGTACAGCATGAACTTGTTACCATTGTTCCTCTTCACCAAGGTGGACCAAATCATCCTTCTCCGTCTCAGTTAACTTCAAAGGCTACGCAAGCAGCTAAAAAGAAAGAAAACTTGTCTATATCTCCAGATTTTATAGATCAAAGGCTGAAGTATAGCAGAGACGAGTTACTTGCGTTGCAGTTCATGTCTTTGCCTGTTGTATCCTCTAGTGAGAGTGGCGATTCAATATTCAAGCAACAGTTAAATTGA 1788 0.429 METIKGKSESELVRLCIEAACESRESIQKWRMQRRTFDHLPSHLADGLIRRLVSRRLLYPSLLEVFKQSAEEVDLRGVYNVDAEWLAYLGAFRQLRYLNLSDCHRITSSALWPISGMASVNHLHLSNCSKLNDAAIHHILSLSNLQKLQISQTSVTAKGIKLLASLKNLSLLDLGGLPVDDVSLTSLQVLKKLEYLDLWGSKVSNEGANILNNFPKLTYLNLAWTNVTKLPNLSSIECLNMSNCTIDSILEDDEAPLAKLILSGATFRSESEFLLHANTNFLSSLDVAHSGLSKFFFLSKLKVIEQLNLSSCMVTDDSIEMIAGVGVSLKSLNLTGTKVSSAGIGILAGHVSNLEMLSLSQTLVDDTAILYISMMPSLKVLDLSNTMVKGCLPQENTDHGSPHSLTALQSLKQLESLNLEYTRVRDEALSPLSSFKELRYLFLKSASLADISLYYLSSIPKLTSLSICDAVLTNYGLHMFKPPQTLKLMDLRGCWLLTEDTIMSFCRIHPQIEVQHELVTIVPLHQGGPNHPSPSQLTSKATQAAKKKENLSISPDFIDQRLKYSRDELLALQFMSLPVVSSSESGDSIFKQQLN* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3287 595 SMART LRR_CC_2 117 142 IPR006553 -
Amo13g3287 595 SMART LRR_CC_2 301 325 IPR006553 -
Amo13g3287 595 SMART LRR_CC_2 92 116 IPR006553 -
Amo13g3287 595 SMART LRR_CC_2 435 459 IPR006553 -
Amo13g3287 595 SMART LRR_CC_2 166 190 IPR006553 -
Amo13g3287 595 Gene3D Ribonuclease Inhibitor 14 154 IPR032675 -
Amo13g3287 595 PANTHER RECEPTOR-LIKE PROTEIN 14 8 592 - -
Amo13g3287 595 Gene3D Ribonuclease Inhibitor 265 394 IPR032675 -
Amo13g3287 595 SUPERFAMILY RNI-like 73 514 - -
Amo13g3287 595 Gene3D Ribonuclease Inhibitor 395 554 IPR032675 -
Amo13g3287 595 Gene3D Ribonuclease Inhibitor 155 260 IPR032675 -
Amo13g3287 595 PANTHER F-BOX/LRR-REPEAT PROTEIN 13 8 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3287 Amo-Chr13 104992551 104994666 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3287 89 248 Receptor kinase-like Gene Family AT4G08850 27.108 6.40e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3287 - - aip:107630709 1128.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3287 13 104992551 104994666 Amo13g3287 13 104992551 104994666 ECH
Amo13g3287 13 104992551 104994666 Amo03g2307 03 96662818 96665396 hybridization