Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3272 ATGACACTGAACTTGTGCTCTCCATGCTTCTCTCGCCTCCTCCTTCATCACTCTTCTTCTCCGCTCAACAAACTCCCCGAAACCTGTGCAAACCACAGCTCCAACACTCTTCTTCCAACTCTCGTCTTCTCCTCTTCTCCGTTTCTTCCCTTCACTTCCAACAACCTTTCCAGAGCTTCCCTCAGTGAAAGCCACAATGAGATTTCTCAGGATGCCGGCCAGCTCGATCACTACCAGCTCCTCCTCCGAGTCGCCGCCTCTGCCAAAGACGCCGATGATGCCTTGCTCATGATTGCACAAAACTCTTCAAGAAACGGAGGCGGCGTCGTTTCCGCCGACGATTCTTCCACCATCATCTCCGCCGCGCTTCAGCGGAACAATTCCGAGCTCGCGTTGTCCATTTTCTACGCCATGCGCTCAAGTCTCGATTCAGTTGGCGGGAATGGACCTTTTGTTGAGGGATGGAAGTGGTCGAGGCCAAATGCACATGTATATACGATCTTGATTCAGGGTTTGGCGGCATCTCTGAGGGTTTCTGATGCCCTTAGGGTGCTCAAATATATCTGTGAGGTTGGGGTATCCCCTGGTGAGGAGGTCCGATTTGGAAAGGTAGTGAGGTGTCCTAGTTGTCAGATAGCTGTTGCAGTTGCACAGCCACAACAAGGTATTCAGATTGTATCTTGTTCAAAGTGTCGCTACCAGTATGAGCTTGTTTCAGGTGACATAGTTAGTATTCAGTCAGAAGAAATCAGCATGGACATTACAGCGTGGGAAAGGGGGTTAAGTTTCCTGAAAATGAAGAAGCAAAGCATTCCTGCGGCTGTTCACTCTATGGTGGTGCAAACCCCTTCTGGTATGGCTCGCACCCACAGATTTGCAACCGAGACGGTTGATGTTCCCGCACAAGAAGGTGAAAGGGTAACTGTTGCGGTGGCAGCTCCATTAAATGTATATAGAAAAGTGGGGCCCTTTAAATTTAGCCCAAGGGCCCCTGATCTCTATCCTGGCGAGGCTATGTGCATAACAAACCACAAAGATGGGCGAGAATCAATTCTGTTAAGAGCCCCAACAAAAGAGGGAAATTCATCATTACTTAATCCCTCAGTCCTCTTTCCCCTTCTTGCTGTCCTTGCCACTGGTGATGCTGCCTCTGGACTTATTGACCCCGGGTTGCCCCAATTCCTATCAGTTGTTGCAGTTTCATCACTCGCTGTTGGAGCCACGTTAAATTCCGTCGTTTTTCCACAGTTGAAGCAGCTTCCACAAGGGTCGGTTGAGGTTACTGCTATCAAACAACGACTTCTATCTCAGTATGATGTGATTCTGTCACGCATCAAAGACCTAAAAGAGGCTGCTGAAAAAGAGATCTGGATGTTAGCTCGAATGTGCCAACTCGAGAACAAAATTTCAGCTGTTGGAGAACCTTCTTATCGGACTCGTAGAAGTAAAGTCAAAAGGGTGCGAGAGAGCCTGCAAAACTCCCTCAGGGGAAGGATTGAATTGATTGATAGCTATGCCAGGATTTCTTCAATGATTGAAATTGAAGTGGAGATGGAAACAGATGTTCTTGCTGCTGAAACTGCTAGCAATGCGGATACTATCACAGAACAGATAGAGCAAATTATGGAGATGGAAAATCTGGAGGAGAGATGGAAAATAGAAGCAGAAGCCAATGACGAGGCCGAAAGAATCCTTAGTTCTCAACCTATGCCTTCTGAGGACGTTTAA 1728 0.4774 MTLNLCSPCFSRLLLHHSSSPLNKLPETCANHSSNTLLPTLVFSSSPFLPFTSNNLSRASLSESHNEISQDAGQLDHYQLLLRVAASAKDADDALLMIAQNSSRNGGGVVSADDSSTIISAALQRNNSELALSIFYAMRSSLDSVGGNGPFVEGWKWSRPNAHVYTILIQGLAASLRVSDALRVLKYICEVGVSPGEEVRFGKVVRCPSCQIAVAVAQPQQGIQIVSCSKCRYQYELVSGDIVSIQSEEISMDITAWERGLSFLKMKKQSIPAAVHSMVVQTPSGMARTHRFATETVDVPAQEGERVTVAVAAPLNVYRKVGPFKFSPRAPDLYPGEAMCITNHKDGRESILLRAPTKEGNSSLLNPSVLFPLLAVLATGDAASGLIDPGLPQFLSVVAVSSLAVGATLNSVVFPQLKQLPQGSVEVTAIKQRLLSQYDVILSRIKDLKEAAEKEIWMLARMCQLENKISAVGEPSYRTRRSKVKRVRESLQNSLRGRIELIDSYARISSMIEIEVEMETDVLAAETASNADTITEQIEQIMEMENLEERWKIEAEANDEAERILSSQPMPSEDV* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3272 575 Gene3D Tetratricopeptide repeat domain 98 199 IPR011990 GO:0005515
Amo13g3272 575 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 1 574 - -
Amo13g3272 575 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 161 195 IPR002885 -
Amo13g3272 575 Coils Coil 544 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3272 Amo-Chr13 104128267 104133239 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3272 - - gmx:100781803 836.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3272 13 104128267 104133239 Amo13g3272 13 104128267 104133239 ECH
Amo13g3272 13 104128267 104133239 Amo03g2290 03 95674473 95678471 hybridization