Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3254 ATGTCCATTATCATGAGTTGCTTTTGCTTTAGAAAAGGTAACCCCGCCAAGACTAATCATGACCAATTCGTCATTCTTGCTTCCGAGACATCCTTTACTGTGAATGAGGTTGAGGCTTTACTTGATYTGTACAGAAAGCTAAGTGGTACAGTTATTGGTGATGGTTTAATTCACAAGGAGGAGTTCCAGTTTGCACTTCTTAGAAATAGTAGTAAGCAGAATCTATTTGTAGACAGGGTATTTGATATGTTTGATATTAAGCGAAACGGGGTTATCGAGTTCACCGAGTTCGTTCGGTCTCTGAGCATCTTTCATCCTAATACATCACCAGAGAAGAAAATTGAATTTGCATTTAGATTGTTTGACCTTAGACAAACTGGATACATTGGACACAACGAGTTGAAGGAAATGGTCTTGGCAACTCTGACTGAATCAGATGTTACTGTTCCAGATGATATTGTTGAATCAATTGTGGGAAAGACAATGAGGGAAGCTGACTCAAATGGAGATGGGAAGATTGATGGTAAAGAGTGGAAAGAATATGTGAGAAAAAATCCCTCTCTTATGAAGATGATGACTCTGCCATATCTAAAGGATATAACTCTGGCATTTCCCAGCTTTGTTTTGCGCACTGAAGTGGAACACTGCTAA 651 0.3902 MSIIMSCFCFRKGNPAKTNHDQFVILASETSFTVNEVEALLDLYRKLSGTVIGDGLIHKEEFQFALLRNSSKQNLFVDRVFDMFDIKRNGVIEFTEFVRSLSIFHPNTSPEKKIEFAFRLFDLRQTGYIGHNELKEMVLATLTESDVTVPDDIVESIVGKTMREADSNGDGKIDGKEWKEYVRKNPSLMKMMTLPYLKDITLAFPSFVLRTEVEHC* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3254 216 ProSiteProfiles EF-hand calcium-binding domain profile. 72 107 IPR002048 GO:0005509
Amo13g3254 216 CDD EFh 113 183 IPR002048 GO:0005509
Amo13g3254 216 Pfam EF hand 77 99 IPR002048 GO:0005509
Amo13g3254 216 Pfam EF-hand domain pair 111 181 IPR002048 GO:0005509
Amo13g3254 216 SMART efh_1 113 141 IPR002048 GO:0005509
Amo13g3254 216 SMART efh_1 76 104 IPR002048 GO:0005509
Amo13g3254 216 SMART efh_1 157 185 IPR002048 GO:0005509
Amo13g3254 216 ProSiteProfiles EF-hand calcium-binding domain profile. 109 144 IPR002048 GO:0005509
Amo13g3254 216 ProSiteProfiles EF-hand calcium-binding domain profile. 153 188 IPR002048 GO:0005509
Amo13g3254 216 PRINTS Recoverin family signature 80 101 - -
Amo13g3254 216 PRINTS Recoverin family signature 127 145 - -
Amo13g3254 216 PRINTS Recoverin family signature 173 193 - -
Amo13g3254 216 PANTHER CALCINEURIN B 5 214 IPR045198 GO:0005509|GO:0019722|GO:0019900
Amo13g3254 216 SUPERFAMILY EF-hand 27 206 IPR011992 -
Amo13g3254 216 Gene3D - 25 216 - -
Amo13g3254 216 PANTHER CALCINEURIN B-LIKE PROTEIN 8 5 214 - -
Amo13g3254 216 ProSitePatterns EF-hand calcium-binding domain. 166 178 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3254 Amo-Chr13 102949455 102951804 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3254 5 214 EF-hand Containing Proteins AT4G17615 53.333 1.44e-81 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3254 K06268 - egr:104441667 295.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3254 13 102949455 102951804 Amo13g3254 13 102949455 102951804 ECH
Amo13g3254 13 102949455 102951804 Amo03g1808 03 55143874 55146942 hybridization