Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3243 ATGGAGAACAATCAAGAGTCGTCATTTTGGCAATTCAGTGACCAACTTCGTGTGCAGGCTTCAAATCTGGCGAACCTGTCTCTGAACGATTCCATTTGGAGCAACAATTACAGTTCAAAGAGGCCTGATGAAAGGAGGAACTTCGACATCAAAGTCGGCGGTGAAATCAACTCATCACCGTCACCTTCACCATCACCGCTTCTCAACAAGTCAAAAGCACCTCTCTCTGATTTCAACGATGGCTGGAAGCAGATCAACAACAACACCATCAATGGATCTCTCTTCACCATGCCTTACAACACCACCACCACCACCACCAACCTTGACCTTGTCGGTGGTGTTGGCATGGGCATGGTCAACGGTGGCTTCAACAAAGGGATTTATTCCAAACCTTCCTATGGAAACTTCAACAGCAGTATCAACCACAACAACAACATGAATATTAATCTCAAAGGACTGAAGGGTAATAAGGGAGAAGATGAGGTGGTATTTCACCCACCGAAAAGTTCCAAGAAGAACAACAACAATAATAATAATAAGAACAAGCAAGGAGGGGATAATGATAACAAGGAGGCGAAGGCCGGTGCCGACAAGAGGTTCAAGACGCTGCCGCCATCGGAGGCTCTACCAAGGAATGAAACCATTGGGGGATACATCTTCGTTTGCAACAATGATACCATGGCAGAGAATCTCAAAAGACAGCTATTTGGTCTGCCTCCACGGTACAGGGATTCAGTGCGGGCAATCACTCCAGGGCTGCCCCTTTTCCTTTACAACTATTCCACCCACCAACTGCACGGCATCTTTGAGGCTGCTAGTTTTGGAGGGTCAAACATAGATGCAAGTGCTTGGGAGGACAAGAAGTGCCCCGGTGAATCCCGTTTCCCGGCTCAGGTTCGGGTCATAACAAGGAAAACATGTGAACCACTTGAGGAGGATTCCTTTAGGCCTATCCTTCACCACTATGATGGCCCTAAATTCCGTCTTGAACTCAGTGTTCCCGAGGCACTCTCTCTGCTCGATATCTTTGCAGAACAACACACTTTCAACGACGCTTTCAAGGCTTTAACTGACTAA 1077 0.4708 MENNQESSFWQFSDQLRVQASNLANLSLNDSIWSNNYSSKRPDERRNFDIKVGGEINSSPSPSPSPLLNKSKAPLSDFNDGWKQINNNTINGSLFTMPYNTTTTTTNLDLVGGVGMGMVNGGFNKGIYSKPSYGNFNSSINHNNNMNINLKGLKGNKGEDEVVFHPPKSSKKNNNNNNNKNKQGGDNDNKEAKAGADKRFKTLPPSEALPRNETIGGYIFVCNNDTMAENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGIFEAASFGGSNIDASAWEDKKCPGESRFPAQVRVITRKTCEPLEEDSFRPILHHYDGPKFRLELSVPEALSLLDIFAEQHTFNDAFKALTD* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3243 358 Pfam Development and cell death domain 216 343 IPR013989 -
Amo13g3243 358 ProSiteProfiles DCD domain profile. 213 345 IPR013989 -
Amo13g3243 358 SMART dcd 213 345 IPR013989 -
Amo13g3243 358 MobiDBLite consensus disorder prediction 148 207 - -
Amo13g3243 358 MobiDBLite consensus disorder prediction 168 183 - -
Amo13g3243 358 PANTHER - 5 355 IPR044832 GO:0034976
Amo13g3243 358 MobiDBLite consensus disorder prediction 54 72 - -
Amo13g3243 358 MobiDBLite consensus disorder prediction 184 200 - -
Amo13g3243 358 PANTHER DCD (DEVELOPMENT AND CELL DEATH) DOMAIN PROTEIN 5 355 - -
Amo13g3243 358 MobiDBLite consensus disorder prediction 52 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3243 Amo-Chr13 101895488 101898206 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3243 - - gmx:100808989 462.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3243 13 101895488 101898206 Amo13g3243 13 101895488 101898206 ECH
Amo13g3243 13 101895488 101898206 Amo03g1912 03 63303520 63304795 hybridization