Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3230 ATGCCGGGTCTCGTTAAGACCCCACCGGAAGCTCCGCCCCTCCGAGTCTCAGTACCCAACACTCCAACCCAAAGATCCGAATCCATCAGAACCCCTTCCCCTCTTCCCAAGAAACCACCCTCACCTTCTCCCTACCGATCCAAGAAGAAGACTCCCGAAACCCCCAATTCCAACCACCTTCTCTCCGATGCCTCTCTCGATAACCCCGATCTTGGCCCATTTCTCCTCAAGCTAGCCCGCGACACCATCGCTTCTGGCGACGGGCCTGCCAAGGCCCTCGACTACGCTATCCGGGCTTCTAAGTCCTTTGAGCGATGCGCCCTCGACGGCGAGCCCAGCCTCGACCTCGCCATGAGCCTCCACGTCCTCGCCGCCATCTACTGCAGCTTAGGGAGGTTCGAGGAGGCTGTGCCGGTGCTTGAGCGCGCGATCCAGGTTCCTGACGTCGCAAGAGGTGCGGATCACGCGCTCGCCGCTTTCTCCGGGTACATGCAGCTCGGAGACACGTTCTCCATGCTTGGCCAGGTCGATAAGTCCATCTCTTGCTACGACCAGGGACTCCAGATTCAGATCCAAGCCTTGGGCGAGACTGATCCTAGGGTTGGAGAAACTTGCAGATACTTGGCTGAGGCCAATGTTCAAGCGATGCAGTTTGATAAGGCAGAAGAACTGTGCAAGAAGACGCTTGAGATTCATCGTGTGCACAGCGAACCAGCCTCTCTTGAAGAGGCAGCTGATAGAAGGCTTATGGCCCTTATATGCGAGGCAAAAGGGGATTACGAAGCGGCTCTTGAGCACCTTGTCCTTGCCAGCATGGCGATGATTGCAAATGGACAGGACAATGAAGTTGCTTCTATTGATGTCAGCATTGGAAACATCTACATGTCTCTCTGTCGCTTTGACGAGGCTATCTTCTCGTACCAGAAGGCACTTACTGTGTTCAAATCAGCCAAGGGAGAAAACCATTCTTCGGTTGCATCTGTCTTTGTAAGACTAGCTGATTTGTACCACAGGACTGGAAAGCTTCGAGAGTCCAAGTCCTATTGCGAAAATGCTCTTAGAATATACTCAAAACCAGTGCCTGGAACCACTGCAGAAGAGATTGCTGGTGGTTTGACTGAAGTTTCGGCCATTTTTGAGTCTGTGGATGAGCCTGAGGAAGCACTGAAGCTTTTACAAAAAGCAATGAAATTGTTGGAGGATAAACCAGGACAGCAGAGCACAATTGCTGGGATAGAAGCACGCATGGGGGTGATGTATTACATGATTGGGCGGTATGAAGATTCAAGGAACTCTTTTGAGAGTGCCGTAGCAAAACTCAGGGTCAGTGGAGAAAGGAAGTCTGCCTTCTTTGGCGTTGTTTTGAACCAGATGGGGTTGGCATGTGTGCAGCTGTTCAAGATAGATGAGGCTGCTGAACTGTTTGAAGAAGCTAGGGGCATTCTTGAACAAGAGTGTGGCCCATGCCATCAAGATACTCTTGGAGTGTATAGCAATCTTGCAGCAACTTATGATGCTATGGGAAGAGTGGGAGATGCAATTGAGATCTTAGAGTATGTGCTTAAATTGAGGGAAGAAAAGCTCGGAATTGCAAATCCTGATTTTGAAGATGAGAAGCGCAGGCTGGCTGAGCTCCTGAAAGAAGCAGGCAAGACACGAGATAGGAAAGCGAAATCTCTGGAAAACCTGATTGATCCAAACTCAAAGAGGACCAAGAAGGAGGGGGCAAAGAGATGGCCTGGTTTGGGTTTTAGAATTTAA 1761 0.5071 MPGLVKTPPEAPPLRVSVPNTPTQRSESIRTPSPLPKKPPSPSPYRSKKKTPETPNSNHLLSDASLDNPDLGPFLLKLARDTIASGDGPAKALDYAIRASKSFERCALDGEPSLDLAMSLHVLAAIYCSLGRFEEAVPVLERAIQVPDVARGADHALAAFSGYMQLGDTFSMLGQVDKSISCYDQGLQIQIQALGETDPRVGETCRYLAEANVQAMQFDKAEELCKKTLEIHRVHSEPASLEEAADRRLMALICEAKGDYEAALEHLVLASMAMIANGQDNEVASIDVSIGNIYMSLCRFDEAIFSYQKALTVFKSAKGENHSSVASVFVRLADLYHRTGKLRESKSYCENALRIYSKPVPGTTAEEIAGGLTEVSAIFESVDEPEEALKLLQKAMKLLEDKPGQQSTIAGIEARMGVMYYMIGRYEDSRNSFESAVAKLRVSGERKSAFFGVVLNQMGLACVQLFKIDEAAELFEEARGILEQECGPCHQDTLGVYSNLAATYDAMGRVGDAIEILEYVLKLREEKLGIANPDFEDEKRRLAELLKEAGKTRDRKAKSLENLIDPNSKRTKKEGAKRWPGLGFRI* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3230 586 Gene3D Tetratricopeptide repeat domain 162 271 IPR011990 GO:0005515
Amo13g3230 586 MobiDBLite consensus disorder prediction 17 31 - -
Amo13g3230 586 MobiDBLite consensus disorder prediction 1 16 - -
Amo13g3230 586 SUPERFAMILY TPR-like 112 265 IPR011990 GO:0005515
Amo13g3230 586 MobiDBLite consensus disorder prediction 1 65 - -
Amo13g3230 586 Pfam Tetratricopeptide repeat 454 526 - -
Amo13g3230 586 Pfam Tetratricopeptide repeat 283 357 - -
Amo13g3230 586 MobiDBLite consensus disorder prediction 551 586 - -
Amo13g3230 586 Pfam MalT-like TPR region 121 270 IPR041617 -
Amo13g3230 586 SUPERFAMILY TPR-like 412 552 IPR011990 GO:0005515
Amo13g3230 586 Gene3D Tetratricopeptide repeat domain 63 161 IPR011990 GO:0005515
Amo13g3230 586 SMART tpr_5 369 402 IPR019734 GO:0005515
Amo13g3230 586 SMART tpr_5 410 443 IPR019734 GO:0005515
Amo13g3230 586 SMART tpr_5 494 527 IPR019734 GO:0005515
Amo13g3230 586 SMART tpr_5 284 317 IPR019734 GO:0005515
Amo13g3230 586 SMART tpr_5 452 485 IPR019734 GO:0005515
Amo13g3230 586 SMART tpr_5 202 235 IPR019734 GO:0005515
Amo13g3230 586 SMART tpr_5 160 193 IPR019734 GO:0005515
Amo13g3230 586 SMART tpr_5 117 150 IPR019734 GO:0005515
Amo13g3230 586 SMART tpr_5 244 277 IPR019734 GO:0005515
Amo13g3230 586 SMART tpr_5 326 359 IPR019734 GO:0005515
Amo13g3230 586 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 585 - -
Amo13g3230 586 Gene3D Tetratricopeptide repeat domain 272 452 IPR011990 GO:0005515
Amo13g3230 586 Gene3D Tetratricopeptide repeat domain 453 577 IPR011990 GO:0005515
Amo13g3230 586 ProSiteProfiles TPR repeat profile. 284 317 IPR019734 GO:0005515
Amo13g3230 586 SUPERFAMILY TPR-like 280 401 IPR011990 GO:0005515
Amo13g3230 586 PANTHER - 1 585 - -
Amo13g3230 586 MobiDBLite consensus disorder prediction 551 580 - -
Amo13g3230 586 MobiDBLite consensus disorder prediction 47 64 - -
Amo13g3230 586 Coils Coil 535 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3230 Amo-Chr13 100111782 100115173 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3230 123 329 Glycosyltransferase AT3G04240 24.686 1.19e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3230 - - gmx:100815100 1028.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3230 13 100111782 100115173 Amo13g3230 13 100111782 100115173 ECH