Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3226 ATGGTGATGTTCGCTTCACAATTAACAGCAACAACCTTCTCGCCTTCATTCCTAATCTCAACTTCCTCCGATACCACTCGTTCTCCCTTCCTCGCTCTCGCTCACCTTTGCTACAACCGAACCTTCTTTCCCACTCGCCGGAGACTCGCCGTTTCCTCCCGCCTCAACTCGTCCAGGTCCTCCGGCGCCGGTGGCTCCGTCGACAACGGCGATGTGCCCTACGAGCTCCACCACGATTTCTCGCCGCAGCGCGAGACGAGGGGATCGCCGGTATTCGTGACGCTGCCGGTGAATACAGTGGGCCCTGAGGGGAAGATATCGAGGCCGAGGGCCATGATGTTCTCGCTGAAGGCGCTCGCCGCCGCGGGCGTGGAGGGCGTTGTGGTTGAGTTTTGGTGGGGAATTATTGAGAGGAAAGAACCTAGGGTTTACGATTGGCGAGGCTATCGTGAGCTCGTGATGATGGCTTGCATGTGTGGCCTCAAGGTTCGTGCTGTTCTTGCTTTCCATCAGTACGGCACAGGCCCTGATGATCCTAATCAGATACCGCTTCCTCTATGGGTGCTTGATGAGATAAACAAAGATCCAGAGTTAGCATATTCTGACCGGTTTGGAAGAAGAAATATTGAATACATTTCCCTAGGATGTGATACTCTTCCTGTGCTGCGTGGACGCACTCCTATTCAAGCATATGCAGATTTTATGAGAGACTTCAGGGAGACTTTCAGGCCTTCTCTTGGCCTTACCATTACAAGGGTACAGATTGGCATGGGTCCTGGTGGTGAACTAAGATATCCGTCATTCTCTTTCCAGAAGCCAAATGTGGCTTCATCTGGTGGACTTGGAGAGTTCCAATGCTATGATAAGTACATGCTAGCTTCTCTAAATGCCTGTGCGAGAAAAATTGGAAAGCGTGAATGGGGAGATGGTGGTCCATTTGGTGCGGGAAGTTTGACGCAAAATCCTGAGCATACTGATTTCTTTAAAAATGAGGGTGGCTCTTGGAACACACCATATGGTAAATTTTTCCTTGAATGGTACTCAAATATGCTGCTGCTGCATGGAGAGAGAATTTGTAGGGAAGCTGAAACTATATTTAGGGGTACAGAAGTCCTTATATCTGCAGAAGTAGCTGCCATTCACTGGCACTACGCCATTCAATCCCATCCATCGGAGTTAACCGCAGGCTATTATAATACTTTCGACAGGGATGGATATTTGCCCATTGCTCGCCTGTTTAGTAAGTATGGGTTTGCAATTTGCTGCTCTTGTTTTGAAATGCAAGATGCCACAATGCAAAAGATAAACCCTAGTGGTAGCCCTGAAGGATTTCTTAAACAGCTTTTGCTGGCTGCTAGGCTTTGTGACATATCACTTGAAGGTCAAAATTTTACAACTGATTTAGATGATGATGCATTCTCCCAAGTGCTGAAGATGTCAAAGTTTTACTCGGATGGGATTGAAAAGCGGCCCTTTGCATTCAACTTTGTAAGAATGAACAAAAGAATGTTTGAAACCCAGAATTGGGATCGGTTTGCACGATTTGTGAGGCAGATGTCTAATGGAAAGATTTTTCAAGCCAGGCTAAGAGCCCAATTGGGAAGTAGCAGCAGCTACTCTTTGACTTTTAAATTGTGA 1638 0.4737 MVMFASQLTATTFSPSFLISTSSDTTRSPFLALAHLCYNRTFFPTRRRLAVSSRLNSSRSSGAGGSVDNGDVPYELHHDFSPQRETRGSPVFVTLPVNTVGPEGKISRPRAMMFSLKALAAAGVEGVVVEFWWGIIERKEPRVYDWRGYRELVMMACMCGLKVRAVLAFHQYGTGPDDPNQIPLPLWVLDEINKDPELAYSDRFGRRNIEYISLGCDTLPVLRGRTPIQAYADFMRDFRETFRPSLGLTITRVQIGMGPGGELRYPSFSFQKPNVASSGGLGEFQCYDKYMLASLNACARKIGKREWGDGGPFGAGSLTQNPEHTDFFKNEGGSWNTPYGKFFLEWYSNMLLLHGERICREAETIFRGTEVLISAEVAAIHWHYAIQSHPSELTAGYYNTFDRDGYLPIARLFSKYGFAICCSCFEMQDATMQKINPSGSPEGFLKQLLLAARLCDISLEGQNFTTDLDDDAFSQVLKMSKFYSDGIEKRPFAFNFVRMNKRMFETQNWDRFARFVRQMSNGKIFQARLRAQLGSSSSYSLTFKL* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3226 545 SUPERFAMILY (Trans)glycosidases 88 526 IPR017853 -
Amo13g3226 545 PANTHER - 35 541 IPR001554 GO:0000272|GO:0016161
Amo13g3226 545 Pfam Glycosyl hydrolase family 14 92 515 IPR001554 GO:0000272|GO:0016161
Amo13g3226 545 Gene3D Glycosidases 81 539 - -
Amo13g3226 545 PANTHER BETA-AMYLASE 35 541 - -
Amo13g3226 545 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 371 387 IPR001554 GO:0000272|GO:0016161
Amo13g3226 545 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 123 137 IPR001554 GO:0000272|GO:0016161
Amo13g3226 545 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 388 399 IPR001554 GO:0000272|GO:0016161
Amo13g3226 545 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 335 354 IPR001554 GO:0000272|GO:0016161
Amo13g3226 545 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 258 280 IPR001554 GO:0000272|GO:0016161
Amo13g3226 545 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 166 187 IPR001554 GO:0000272|GO:0016161
Amo13g3226 545 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 406 429 IPR001554 GO:0000272|GO:0016161
Amo13g3226 545 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 144 162 IPR001554 GO:0000272|GO:0016161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3226 Amo-Chr13 99018713 99021932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3226 90 522 Glycoside Hydrolase AT4G17090 50.922 4.91e-157 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3226 K01177 - gmx:100805981 811.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3226 13 99018713 99021932 Amo13g3226 13 99018713 99021932 ECH
Amo13g3226 13 99018713 99021932 Amo03g1899 03 62067791 62071031 hybridization