Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2936 ATGTACAACAGAAGCCTTTGCTCTGCGTGCACCAGAACTCTCTCACATGTTACAGCTTCAACTTCCAAATTCATTGTGCACGCTGATAATTACAATTATGCCATCCCAAAACACCGCTTTCCAAACGCACAACATCTAGAGCCTCTCACAACCCAATTGGAGTCTCTGTTCCGTTCTTGTTCTGATTCCTCTCTGCTTCCACAGGTCAAGCAAATTCATGCTTGGGTCACTGTTTGTGGAATGAGTGATATCGATGTGTTGGGTTCAAGAATTGCAGGGTTGTATGTTCTTTGTGGTAGCATCAGGGATGCTAGGAACTTGTTTTTCAGGCTTGAGTTGGGCTATGCACTTCCCTGGAATTGGATGATAAGAGGGTTTGTGATGTTGGGGTGGCATGATTTTGCATTGTTGTTTTACTTCATGATGTTGGGTAGTGGAGTCTCGCCTGATAAATACACTTTCCCTTACATTATAAAAGCTTGTGGTGGTTCAAATAATGTTGCATTGGGTAAGATGGTGCATAACACAATTCGGTCAATAGGGATCCATGTGGACTTGTTTGTTGGTAGTGCCTTGATCAAGTTGTATGCAGATAATGGGTGTATTTGTGATGCAAGGCAAGTGTTCGATGAATTGTCTGTAAGAGACTGCGTTTTGTGGAATGTCATGCTAAATGGTTATGTAACTAGCAGTGATTTTAACAATGCAATAGAAACTTTTCAGGAAATGAGGAATTGTTATATCAAACCCAATTCAGTAACTTTTACTTGTATGTTATCATTATGCTCTACAAGAGGGATGTTTTATGTTGGTACTCAGCTTCATGGTCTTGTTATTGGTAGTGGGTTCCAGCATGATTCGCAGGTAGCAAACACACTACTTTCCATGTATTCCAAATGTGGTAACCTTGTTGATGCACGTAGGTTATTTGATTCAATGCCACAGACTGATACAGTTACTTGGAATGGGTTGATTGCTGGATATGTGCAAAATGGATTGGCAGATGAGGCCTTAACTTTATTTAATGCAATGATCTCTGCTAGTGTCAAACCAGATTCGATCACTTTCGCAAGTTTCCTTCCTTCTATTGTTGAATCTGGTAGTAGTAGTACCAAACATTGTAAAGAAATTCATGGTTATATAGTCCGGCACAGGATTCCTTTTGATGTTTATTTAAAGAGTTCACTTATTGACGTATACTTAAAGAATAGGGACGTGGATACGGCATGCAAGATTTTCCAGCAGAATACTTCAGTTGATGTTGCAGTTTGTACAGCTATGATCTCGGGCTATGTACTTAATGGTCTGTATATTGATGCTATAGATTTTTTTAGGTGGTTAGTTCAGGAGGGAATGGTGCCTAATTGCCTGACCATGGCTGCTGTTTTGCCCGCATGTGCTGCTTCGGCTTCTCTGAGATTAGGGAAAGAATTACATTGTGTCATTCTGAAAAATCAACTTGATAGTGTGCTTCATGTGGGGTCTGCCATCACAGATATGTATTCAAAATGTGGAAGACTAGATCTTGCATATCAATTTTTCAGAAGGATGCCTGAAAGAGATAGTGTATGTTGGAACTCACTGATTACAAGCTTCTCACAGAATGGTAAACCAGAAATGGCTATTAATATTTTTCGTGGAATGGGAAGGAGTGGAACCAAGTTTGATTCCGTGAGCCTATCATCTGCACTTTCTGCGAGTGCAAATATACCGGCACTCTATTCTGGGAAAGAGATGCACGGCTTTGTGATAAGAAATGCATTTACTTCTGACACTATTGTTACAAGTGCACTGATAGACATGTATTCTAAATGTGGAAAATTAGCCATGGCTCAGTATGTGTTTGACCTGATGTACTGGAGGAATGAAATTTCATGGAATAGCATCATTGCTGCATATGGAAACCATGGTCGCCCCAGGGAATGTCTCGATCTATTCCATGAAATGTTAAAAGCCGGGATTCACCCGGATCACGTTACTTTCCTTGTTATAATATCTGCTTGTGCTCATGCTGGCCTAGTTGATGAAGGCATATCATATTTCCGTTGCATGACTGAAAGTTATGGGATTTGTGCTAAGATGGAGCACTATGCATGCATGGTAGATTTGTATGGTCGAGCTGGTCGTTTGCACGAGGCATTCGATACTATAAAGAGCATGCCGCTTGCTCCGGACGCAGGTGTTTGGGGGACACTACTAGGAGCTTGTCGGGTTCATGGCAATGTTGAGTTGGCCAGACTAGCTTCCGAACATCTTCTGGAGTTAGACCCCCAAAATTCGGGGTACTATGTATTGCTTTCGAATATACATGCCGGTGCAGGGGAGTGGTCAGATGTTCTTAAGATTCGAAGTCGAATGAAGGAAAAAGGAGTTCAGAAAATATGCGGATACAGCTGGATTGATGTGAACGGCAGCACCCATATGTTTTCTGCTGCTGATGGTAGTCACCCACAATCTTTTGAGATCTATTTGATTCTGGAGAGTCTTCTCCTTGAGTTAAAAAAACAGGGTTATGTTCCTCAACCATACCTTCCACTGCATCCACAAGTCGTTGTAAAAACTTGA 2565 0.4136 MYNRSLCSACTRTLSHVTASTSKFIVHADNYNYAIPKHRFPNAQHLEPLTTQLESLFRSCSDSSLLPQVKQIHAWVTVCGMSDIDVLGSRIAGLYVLCGSIRDARNLFFRLELGYALPWNWMIRGFVMLGWHDFALLFYFMMLGSGVSPDKYTFPYIIKACGGSNNVALGKMVHNTIRSIGIHVDLFVGSALIKLYADNGCICDARQVFDELSVRDCVLWNVMLNGYVTSSDFNNAIETFQEMRNCYIKPNSVTFTCMLSLCSTRGMFYVGTQLHGLVIGSGFQHDSQVANTLLSMYSKCGNLVDARRLFDSMPQTDTVTWNGLIAGYVQNGLADEALTLFNAMISASVKPDSITFASFLPSIVESGSSSTKHCKEIHGYIVRHRIPFDVYLKSSLIDVYLKNRDVDTACKIFQQNTSVDVAVCTAMISGYVLNGLYIDAIDFFRWLVQEGMVPNCLTMAAVLPACAASASLRLGKELHCVILKNQLDSVLHVGSAITDMYSKCGRLDLAYQFFRRMPERDSVCWNSLITSFSQNGKPEMAINIFRGMGRSGTKFDSVSLSSALSASANIPALYSGKEMHGFVIRNAFTSDTIVTSALIDMYSKCGKLAMAQYVFDLMYWRNEISWNSIIAAYGNHGRPRECLDLFHEMLKAGIHPDHVTFLVIISACAHAGLVDEGISYFRCMTESYGICAKMEHYACMVDLYGRAGRLHEAFDTIKSMPLAPDAGVWGTLLGACRVHGNVELARLASEHLLELDPQNSGYYVLLSNIHAGAGEWSDVLKIRSRMKEKGVQKICGYSWIDVNGSTHMFSAADGSHPQSFEIYLILESLLLELKKQGYVPQPYLPLHPQVVVKT* 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2936 854 Pfam E motif 739 801 IPR046848 -
Amo13g2936 854 PANTHER - 539 850 - -
Amo13g2936 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 622 656 IPR002885 -
Amo13g2936 854 PANTHER - 539 850 - -
Amo13g2936 854 SUPERFAMILY TPR-like 500 826 IPR011990 GO:0005515
Amo13g2936 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
Amo13g2936 854 Pfam PPR repeat family 622 669 IPR002885 -
Amo13g2936 854 Pfam PPR repeat family 317 358 IPR002885 -
Amo13g2936 854 Pfam PPR repeat family 216 262 IPR002885 -
Amo13g2936 854 Gene3D Tetratricopeptide repeat domain 594 820 IPR011990 GO:0005515
Amo13g2936 854 Gene3D Tetratricopeptide repeat domain 120 267 IPR011990 GO:0005515
Amo13g2936 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
Amo13g2936 854 PANTHER - 33 438 - -
Amo13g2936 854 PANTHER - 438 537 - -
Amo13g2936 854 Gene3D Tetratricopeptide repeat domain 268 370 IPR011990 GO:0005515
Amo13g2936 854 Gene3D Tetratricopeptide repeat domain 479 575 IPR011990 GO:0005515
Amo13g2936 854 Gene3D Tetratricopeptide repeat domain 371 478 IPR011990 GO:0005515
Amo13g2936 854 PANTHER - 438 537 - -
Amo13g2936 854 PANTHER - 33 438 - -
Amo13g2936 854 Pfam PPR repeat 119 147 IPR002885 -
Amo13g2936 854 Pfam PPR repeat 394 414 IPR002885 -
Amo13g2936 854 Pfam PPR repeat 424 445 IPR002885 -
Amo13g2936 854 Pfam PPR repeat 499 520 IPR002885 -
Amo13g2936 854 Pfam PPR repeat 596 618 IPR002885 -
Amo13g2936 854 Pfam PPR repeat 697 720 IPR002885 -
Amo13g2936 854 Pfam PPR repeat 291 314 IPR002885 -
Amo13g2936 854 Pfam PPR repeat 523 552 IPR002885 -
Amo13g2936 854 TIGRFAM PPR: pentatricopeptide repeat domain 291 314 IPR002885 -
Amo13g2936 854 TIGRFAM PPR: pentatricopeptide repeat domain 218 251 IPR002885 -
Amo13g2936 854 TIGRFAM PPR: pentatricopeptide repeat domain 319 353 IPR002885 -
Amo13g2936 854 TIGRFAM PPR: pentatricopeptide repeat domain 423 456 IPR002885 -
Amo13g2936 854 TIGRFAM PPR: pentatricopeptide repeat domain 523 556 IPR002885 -
Amo13g2936 854 TIGRFAM PPR: pentatricopeptide repeat domain 624 657 IPR002885 -
Amo13g2936 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 521 555 IPR002885 -
Amo13g2936 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 454 IPR002885 -
Amo13g2936 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 316 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2936 Amo-Chr13 68284771 68289320 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2936 141 847 Glycoside Hydrolase AT3G49170 34.540 4.38e-137 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2936 - - aip:107630023 1553.5