Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2829 ATGAAAACGTCGTCGTTTCGGAGATGCAGCAACGCAGAAGAAATCCAGTTACCGGAAAACCTAGGAAGCTCGTCGCCAGCGTCCGGTAGTGGCGGCGCCGGACATTCCTACGGCGCGATGTTGCCGGTGTTCCTCAACAACCTCCGTAGCAACCACCACCAGGAGCTCGTTGAAATCACCTTGGAGATCGACGACGACGCAGTCGTGCTCTGCAACGTCGCGCCGGCAAATTCCGCTCCGGACGCATCTCCATCGTCTGTTTCCGCCGCCGGCTCTGCTCCCGTGGCATCGCCGTCGTCAGTTTCTTGCGCCGGCGAGGAAGCCGGCGCCATCGGTGCCGGAGTGCCGAGAAGTCTGTCGATTGCGTCGCGGATTCGGAGAAAGTTCCCGTGGATAAGATCGGCGTCGTCGCGGAACTCGGTATCGTCGGAGAGCGGCGGCACCGTAAGTGTTGAAGATCCAGTGGCGACAGCACGGAACGCGAGGAGGATGCGGTTACAGATTGAACGGTCGAGATCGAGCGCGCAGAGTGCGCTGAAGGGTTTGAGATTCATCAGCAAGACAGGGTGTGATGGTAGTAGTGAGGAACTGTGGAAGAAGGTGGAAGAGAGGTTCATGTTGCTCTCAAAGGATGGCTTGCTCGCTCGAGAGGACTTCGGTGAATGCATTGGGATGGAGGATTCAAAAGAATTTGCGGTGGGTATATTTGATACGTTAGCTAGAAGAAAAGAAAATAGAGTCAGCAAAATAACGAAGGAAGAGTTGCATCAATTCTGGTTGCAAATTTCGGATCAAAGCTTTGATAATCGCCTTCAGATTTTCTTTGACATGGCGGACAGTAATGAAGATGGAAGAATTACAAGGGTGGAAGTGCAAGAGCTCATAACACTCAGTGCTTCTGCAAATAAATTATCGAAGCTAAAAGAACAAGCTGAAAGATACGCTGCATTGATAATGGAAGAGTTGGACCCAGAAAACCTGGGTTATATCGAGTTGTGGCAGTTAGAAATGTTGTTACTACAAAAGGATAACTACATGAACTACAGCAGACAACTAAGTAGCAGTAGTGTAAGCTGGAGTCAGAATTTGAGTGGGTCAAGGCCCAGAAGCAAGTTCCAAAGATTCTTCTGGACATTTCAGTTCCTTGAGCTAGAATATTGGAGGAGGGGCTGGATTTTGTTACTGTGGTTGGTTATCATGGCATGCCTTTTTGCTTGGAAATTTTACCAATACAGAAACAGAACAACTTTCAAAGTCATGGGCTACTGCATACCTGTGGCTAAAGGCGCTGCAGAGACTCTCAAGTTCAATATGGCTCTCATTCTTTTACCTGTTTGTCGGAACACACTCACTTGGCTTCGTTCCACAAGAGCCAGAAAGTTTGTCTCTTTTGATGATAATATTAATTTCCACAAGACTATTGCATTTGCCATAGCTATTGGAGTTGCTGTTCATGCATTCACTCATCTGACGTGTGATTTCCCTCTACTCATAAATTCATCTCCAGAAAAATTTTCACTCATAGCTTCAGATTTCCACCAGAAAAAACCAACATACGCATCACTTCTGACCAGCATTGAAGGCGCCACTGGAATCTTAATGGTTCTTTTAATGCTCATCTCTTTTACACTCGCAACTCATCACTTCCGGAGAAGTGCACTCAGGCTTCCACCACCCTTTAACAGATTGACAGGCTTCAATGCATTCTGGTACTCGCACCACCTTCTTGGCCTTGTCTACATTCTGTTGATTCTCCATGGATATTTCTTATATTTGACTCATCAGTGGTATAAGAAAACGACATGGATGTATATAGCTGTTCCACTGTTACTGTATATAGCAGAGCGCAGTCTAAGAAATCGTAGATCAGCACACTATTCAGTAAAAATTGTAAAGGTTTCGGTGCTACCAGGAAATGTCTTCAGCATAATCATGTGCAAGCCAACTGGATTCAAGTACAAGAGCGGACAGTACGTGTTTTTACAGTGTCCAAATATCTCTCCATTTGAGTGGCACCCATTTTCCATCACGTCAGCACCAGGAGATGAGTACCTAAGTGTTCACATTCGCACAGTAGGAGACTGGACAAAAGAACTCAAGCGAGTTTTCACAGAAAATGATGAAACATTACCTTTGGATAGTAATCGAGCAACACTAGGGGAGCTAGTGCAGATGGAACAAAGAAGACAGCCAAAACTTTTCTTAGATGGCCCTTATGGAGCCCCAGCACAAGACTACCAGAGTTATGATGTATTGCTCCTCATAGGATTAGGAATTGGAGCAACTCCTTTCATTAGCATTCTCAGGAATCTTATCAATGAAACCAGAGTAATTGATGAAATGGAATCAATGACGGAAACAACAAAATCAGGAGACAGCTTAAATAGTTTTGCATCTTCAAATTTGACGCCAAGTGGAAACAAGAGAACACAAAGGACTACAAATGCTTACTTCTACTGGGTTACCAGAGAACCTGGATCTTTTGAATGGTTTGAAGGAGTGCTGGATCAAGTTGCAGAAATGGACCACAAAGGCCAAATTGAACTTCACAACTATCTTACAAGTGTCTATGAAGAGGGGGATGCAAGATCCACCTTAATTACCATGATTCAAGCACTAAACCATGCCAAACACGGGGTTGACATCCTATCAGGCACTCGAGTAAGGACGCACTTTGCTAGGCCTAACTGGAGAGAAGTTTTCACAAAGATAGCCTCTAAACATCGGCAGTCTACAGTAGGGGTGTTTTACTGCGGGATGCCAGTGTTAGCAAAGGAGTTAAAGAAGCTATCACTTGAGATGAGCCACAAGACAACTACACGTTTCAACTTTCACAAGGAGTATTTCTGA 2850 0.453 MKTSSFRRCSNAEEIQLPENLGSSSPASGSGGAGHSYGAMLPVFLNNLRSNHHQELVEITLEIDDDAVVLCNVAPANSAPDASPSSVSAAGSAPVASPSSVSCAGEEAGAIGAGVPRSLSIASRIRRKFPWIRSASSRNSVSSESGGTVSVEDPVATARNARRMRLQIERSRSSAQSALKGLRFISKTGCDGSSEELWKKVEERFMLLSKDGLLAREDFGECIGMEDSKEFAVGIFDTLARRKENRVSKITKEELHQFWLQISDQSFDNRLQIFFDMADSNEDGRITRVEVQELITLSASANKLSKLKEQAERYAALIMEELDPENLGYIELWQLEMLLLQKDNYMNYSRQLSSSSVSWSQNLSGSRPRSKFQRFFWTFQFLELEYWRRGWILLLWLVIMACLFAWKFYQYRNRTTFKVMGYCIPVAKGAAETLKFNMALILLPVCRNTLTWLRSTRARKFVSFDDNINFHKTIAFAIAIGVAVHAFTHLTCDFPLLINSSPEKFSLIASDFHQKKPTYASLLTSIEGATGILMVLLMLISFTLATHHFRRSALRLPPPFNRLTGFNAFWYSHHLLGLVYILLILHGYFLYLTHQWYKKTTWMYIAVPLLLYIAERSLRNRRSAHYSVKIVKVSVLPGNVFSIIMCKPTGFKYKSGQYVFLQCPNISPFEWHPFSITSAPGDEYLSVHIRTVGDWTKELKRVFTENDETLPLDSNRATLGELVQMEQRRQPKLFLDGPYGAPAQDYQSYDVLLLIGLGIGATPFISILRNLINETRVIDEMESMTETTKSGDSLNSFASSNLTPSGNKRTQRTTNAYFYWVTREPGSFEWFEGVLDQVAEMDHKGQIELHNYLTSVYEEGDARSTLITMIQALNHAKHGVDILSGTRVRTHFARPNWREVFTKIASKHRQSTVGVFYCGMPVLAKELKKLSLEMSHKTTTRFNFHKEYF* 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2829 949 SUPERFAMILY EF-hand 193 351 IPR011992 -
Amo13g2829 949 Gene3D Translation factors 613 711 - -
Amo13g2829 949 Pfam Ferric reductase NAD binding domain 749 931 IPR013121 GO:0016491
Amo13g2829 949 MobiDBLite consensus disorder prediction 787 808 - -
Amo13g2829 949 MobiDBLite consensus disorder prediction 784 808 - -
Amo13g2829 949 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 623 745 IPR017927 GO:0016491
Amo13g2829 949 SUPERFAMILY Riboflavin synthase domain-like 626 742 IPR017938 -
Amo13g2829 949 MobiDBLite consensus disorder prediction 1 33 - -
Amo13g2829 949 ProSiteProfiles EF-hand calcium-binding domain profile. 266 301 IPR002048 GO:0005509
Amo13g2829 949 Pfam Ferric reductase like transmembrane component 429 584 IPR013130 -
Amo13g2829 949 CDD NOX_Duox_like_FAD_NADP 630 891 - -
Amo13g2829 949 SFLD NADPH oxidase subgroup (NOX) 165 949 - -
Amo13g2829 949 MobiDBLite consensus disorder prediction 78 99 - -
Amo13g2829 949 Pfam FAD-binding domain 626 742 IPR013112 GO:0016491
Amo13g2829 949 PRINTS Cytochrome B-245 heavy chain signature 474 492 IPR000778 GO:0016020|GO:0016491
Amo13g2829 949 PRINTS Cytochrome B-245 heavy chain signature 566 586 IPR000778 GO:0016020|GO:0016491
Amo13g2829 949 PRINTS Cytochrome B-245 heavy chain signature 731 744 IPR000778 GO:0016020|GO:0016491
Amo13g2829 949 PRINTS Cytochrome B-245 heavy chain signature 754 771 IPR000778 GO:0016020|GO:0016491
Amo13g2829 949 Pfam Respiratory burst NADPH oxidase 168 268 IPR013623 GO:0004601|GO:0050664
Amo13g2829 949 Gene3D - 740 949 IPR039261 -
Amo13g2829 949 Gene3D - 168 287 - -
Amo13g2829 949 MobiDBLite consensus disorder prediction 1 31 - -
Amo13g2829 949 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 746 949 IPR039261 -
Amo13g2829 949 ProSitePatterns EF-hand calcium-binding domain. 279 291 IPR018247 -
Amo13g2829 949 PANTHER RESPIRATORY BURST OXIDASE HOMOLOG PROTEIN E 45 949 - -
Amo13g2829 949 PANTHER NADPH OXIDASE 45 949 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2829 Amo-Chr13 61538299 61549703 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2829 24 949 Miscellaneous Gene Families AT1G19230 60.291 0.0 1123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2829 K13447 - gmx:100805697 1439.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2829 13 61538299 61549703 Amo13g2829 13 61538299 61549703 ECH