Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2681 ATGATGTTGTCGAGAGGTGAAGCTGGTAAGAAGAGTGTTGGTGGTTCTAATAACCAAAAGAGGTTGTTGAAAGATGTTGAGACTATGAGCAAAGCTCTTTACTCGGACAGAAATTCRTCAAGGAATTCAATTCCAACATGGAGTTCTCGATCCAAGCCCCTTTTGCCTGATCCGAAATCAAGGCCGAAATCCGGTACTGGAGACGAAACGAATTCGCAGAAGGATAAGAGGTCCATATGGAATTGGAGGCCGTTGAAAGCCCTTTCCCATATACGCAATAAGAGATTTAATTGTAGTTTTTATCTCCAAGTCCATTTGATTGAAGGGCTGCCTTTGAATTTCGAGGATTCAGTGCTTTCCGTGTATTGGAAAAGGCGCGATGGGGTTCTGGTGACGCGGCCGGCTGTGGTGGTTGAAGGGAGGGCTGAGTTTGAAGAGAAGTTGACTTACACTTGCTCAGTGTATGGTAGTAGGAGTGGACCTCATCATTCAGCCAAGTATGAGGCCAAGCATTTCTTGCTCTATGCTTCTCTTGTTAATGCGCCCGACCTTGATTTGGGGAAGCACCGCGTTGACCTCACGAGGCTGCTTCCTCTTACGCTGGAGGAGCTTGAAGAGGAGAAGAGCTCCGGAAAGTGGACTACGAGTTTTAGGCTAACTGGATTGGCTAAGGGTGGCGTGATGAATGTTAGTTTTGGGTATCTGGTTGTTGGCGATAATGCCGGTGGTTCTAGAGACAACCATCATGCTCCTAATTCATTGAATTTCAGGCAGAGTAGTTTGGCTTCAATGAAATCAGATGTTAAACCGAGACAGTTTGATGGAAGCAGCAGCATCAGGCGTGCTGGAAGTTTACAAGGTTTTATCAGTCCGTCTTTGTCTGGGTCCATAGATGAGGTAAAGGATCTTCATGAGGTATTGCCAACGTCCAAGTCTGCACTGGCCAGCTCTATCGACATCTTGTATAAGAAATTTGAAGAAGAAAAGGTACATGATCCTCTTCACAGTGAACCTGCAGTTGATGCTTTCGCCAATAGTGTTGAGCCAATCAAACCAGATGCCTATGCTTCATCTGATCTTGGAAAAGATAATGCTGAAGATCATGTCGGTAATCATACAAATACAGGTCCAGTGCATGACGAACCTGAACTCGATGCATATCATGAAAAACTGGATACAGTTAAACAAGATGGCTATCCCCATTCCGATTCTGCAAAAGAAAACCCTGACCAGTGCCAAGGTAATGAGTTTTCTGTTGTTGATAAGGGCACAGAAATGGCACCAAATGAACCCTTTAAACCAGAAGAGTCCAGGATAATGGCTCATGAGGATTCTCCTGCTGTTTATAGTAATTGTAACTTTGGTACTGAAACTCTGCAAGTATCTTCAGAAAATAGTGTGATACTTGATTCTTTTGGTGAATTAAATGATAATTCCAATGATCAAGCACAAGTAAATGAGTTTACTTCCAAAGAGGATGGTTTATACACAAAAGAACAGCTCCTGCAAGAACTAGAATCGGCTTTAAATAGCGTATCAAATTTGGAGACAGCAGCCCTAGACTCTCCTGAAATTATGGAAACCAAATATGAACCTAAGATGAAAGAAGCACATAGCATGGATGACGTTACAGAATCAGTTGCCAGTGAATTTTTAAGCATGCTAGGCATGGAACACAGACCAATGGGCTTGAATTCTGAAGGTGATCCTGAGTCTCCAAGAGAGCTCCTTTTGAGACAATTTGAGAAGGAGGCTTTGGATGGGGGCTTCTCTTTGTTTGATTTTGGCATGGGCGATGATGATGAGGCAGATGCTGGCTACGATGCTTCTACTGGATCTGAGCACTGGAACTACTCTGAGGGTATTAGGCCATCATCATCATCCTTGTTTCAAGATATGTGCAAGGAGCATCCGGCTGAGTCTAAGGATGTGAGAGGCAAACAGAAAGCTCAGATGCTAGAAGATTTGGAAACAGAAGCCTTAATGAGGGAGTGGGGTTTGAGTGAGAAGGTTTTTCTTCAATCTCCTTCAAAAGATCGTGTTGGTTTTGGAAGTCCTATTGATCTTCCACCTGAAGAACCTCCTATATTGCCTCCTCTTGCTGAGGGGTTGGGCCCTTTTCTACAAACAAAAGATGGGGGGTTCGTGCGGTCGATGAATCCCACTCTTTTTCAGAATGCTAAAAGTGGTGGCAGCTTAATTATGCAAGTTTCCAACCCTGTCGTGGTACCTGCTGAAATGGGCTCCGGTATAATGGAGGTTCTGCAGGGTTTAGCTTCAGTGGGAATCGAAAAGCTCTCAATGCAGGCGAAGGAATTAATGCCACTCGAAGATATCACGGGGAAGACAATGGAGCAAGTAGCATGGGAAGCTATGCCTGCCATAGAGGGTACAGAGAGTAGGCAATGCAGTTTGCAACATGATTTGATAGCAGGGCAAGATAGTACTTTCATGCAAAGAGACTTGAAAGGAAGACCATCTGGGCAGAAGTTCAACCAGTCTAGTTCAAGTTCAGTGGACAACCAGACGGGCTCGGAGTTTGTTTCGTTGGAAGATCTTGCTCCTTTGGCTATGGAAAAAATTGAGGCACTTTCAATGGAGGGTTTAAGAGTACAATCTGGCATGTCAAGTGAGGAGGCTCCATCAAACATCGTTGCCCAATCGATTGGGGATATTTCAGCTCTCCAGGGCAAGGGGATTGATGTGAGTGGGTCTCTTGGCCTGGAAGGTGCTGCTGGTTTGCAGTTGATGGATACAAAAGGCAGCAGCAATGGTGTCGATGGAATAATGGGCCTATCTTTAACTCTTGACGAATGGATGAAGCTGGACTCTGGTGAGATCGATGATATCGATAACATTAGCGAGCATACTTCCAAGGTTCTTGCAGCCCATCATGCTAACTCTTTTGACTTCATGCGTGGGAATTCGAAGGGAGATAGGAAACGAAGTAAAGGCAGAAAATATGGTTTGCTAGGAAACAATTTCACAGTAGCATTGATGGTGCAACTTCGTGATCCTATGAGAAACTATGAGCCCGTCGGAACTCCAATGCTCGCACTTATACAAGTTGAGAGAGAATTTGTCCTACCAAAGCAAAGAATTTACTGTACTGTGTCCGAGTTGAGGAACAACAACAACAACAATGAGGATGATGAGTGCGAGATAATAGCTAAGGTGGAGACAAAGGACGAAAGGAAAGAGGATAAAAGCTCTGAAGAAGAGCTCATTCCCCAGTTCAAAATTACTGAAGTCCATGTTGCAGGTGTGAAGAATGAGCCTCAGAAAAAGAAGCTTTGGGGAACTTCGACCCAGCAACAGTCTGGTTCGCGCTGGTTGCTTGCTAATGGAATGGGAAAGGGCAACAAGCTCCCATTGAAGTCGAAGGCTGCATCGAAATCTGGTGCTCAAGTTACTACAAAGGTGCAGCCTGGTGACACCTTGTGGAGCGTATCATCTCGAATTTACGGTACTGGCTCGAAATGGAAGGAACTGGCAAAATTTAATCCTCATATCAGAAACCCCAATGTCATTATACCAAGTGATACCATAAGACTTAGTTGA 3561 0.4445 MMLSRGEAGKKSVGGSNNQKRLLKDVETMSKALYSDRNSSRNSIPTWSSRSKPLLPDPKSRPKSGTGDETNSQKDKRSIWNWRPLKALSHIRNKRFNCSFYLQVHLIEGLPLNFEDSVLSVYWKRRDGVLVTRPAVVVEGRAEFEEKLTYTCSVYGSRSGPHHSAKYEAKHFLLYASLVNAPDLDLGKHRVDLTRLLPLTLEELEEEKSSGKWTTSFRLTGLAKGGVMNVSFGYLVVGDNAGGSRDNHHAPNSLNFRQSSLASMKSDVKPRQFDGSSSIRRAGSLQGFISPSLSGSIDEVKDLHEVLPTSKSALASSIDILYKKFEEEKVHDPLHSEPAVDAFANSVEPIKPDAYASSDLGKDNAEDHVGNHTNTGPVHDEPELDAYHEKLDTVKQDGYPHSDSAKENPDQCQGNEFSVVDKGTEMAPNEPFKPEESRIMAHEDSPAVYSNCNFGTETLQVSSENSVILDSFGELNDNSNDQAQVNEFTSKEDGLYTKEQLLQELESALNSVSNLETAALDSPEIMETKYEPKMKEAHSMDDVTESVASEFLSMLGMEHRPMGLNSEGDPESPRELLLRQFEKEALDGGFSLFDFGMGDDDEADAGYDASTGSEHWNYSEGIRPSSSSLFQDMCKEHPAESKDVRGKQKAQMLEDLETEALMREWGLSEKVFLQSPSKDRVGFGSPIDLPPEEPPILPPLAEGLGPFLQTKDGGFVRSMNPTLFQNAKSGGSLIMQVSNPVVVPAEMGSGIMEVLQGLASVGIEKLSMQAKELMPLEDITGKTMEQVAWEAMPAIEGTESRQCSLQHDLIAGQDSTFMQRDLKGRPSGQKFNQSSSSSVDNQTGSEFVSLEDLAPLAMEKIEALSMEGLRVQSGMSSEEAPSNIVAQSIGDISALQGKGIDVSGSLGLEGAAGLQLMDTKGSSNGVDGIMGLSLTLDEWMKLDSGEIDDIDNISEHTSKVLAAHHANSFDFMRGNSKGDRKRSKGRKYGLLGNNFTVALMVQLRDPMRNYEPVGTPMLALIQVEREFVLPKQRIYCTVSELRNNNNNNEDDECEIIAKVETKDERKEDKSSEEELIPQFKITEVHVAGVKNEPQKKKLWGTSTQQQSGSRWLLANGMGKGNKLPLKSKAASKSGAQVTTKVQPGDTLWSVSSRIYGTGSKWKELAKFNPHIRNPNVIIPSDTIRLS* 1187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2681 1186 CDD LysM 1140 1185 IPR018392 -
Amo13g2681 1186 Pfam LysM domain 1140 1185 IPR018392 -
Amo13g2681 1186 ProSiteProfiles LysM domain profile. 1137 1185 IPR018392 -
Amo13g2681 1186 ProSiteProfiles C2 NT-type domain profile. 88 236 IPR019448 -
Amo13g2681 1186 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 2 1185 - -
Amo13g2681 1186 SUPERFAMILY LysM domain 1137 1185 IPR036779 -
Amo13g2681 1186 MobiDBLite consensus disorder prediction 34 50 - -
Amo13g2681 1186 Gene3D LysM domain 1127 1186 IPR036779 -
Amo13g2681 1186 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 2 1185 IPR039614 -
Amo13g2681 1186 Coils Coil 498 518 - -
Amo13g2681 1186 MobiDBLite consensus disorder prediction 1 22 - -
Amo13g2681 1186 SMART LysM_2 1138 1186 IPR018392 -
Amo13g2681 1186 MobiDBLite consensus disorder prediction 820 843 - -
Amo13g2681 1186 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 93 208 IPR019448 -
Amo13g2681 1186 MobiDBLite consensus disorder prediction 34 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2681 Amo-Chr13 54218938 54223238 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2681 - - mtr:MTR_2g040970 1573.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2681 13 54218938 54223238 Amo13g2681 13 54218938 54223238 ECH
Amo01g2723 01 98029540 98033750 Amo13g2681 13 54218938 54223238 PCT
Amo13g2681 13 54218938 54223238 Amo01g2723 01 98029540 98033750 PCT