Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2566 ATGGAGAGTCCGCCTTCAGCTGGTGCCGCCTCTCCTACGGTGGGGAAGAAGAAGGAGACAAGGGGCCGAAAGCCCAAGCCCAAGCCTAAGGACGAACAACACACCAAGACCATCAAAGAAGGCAAGAAGACCCCCCATCAGCAGCACCATCAACAACACCACCACCACCAACCTTCGGTGGACGACAAGTACACTCAGTGGAAGTCTCTTGTTCCCGTTCTCTATGACTGGCTCGCCAACCATAACCTCGTCTGGCCTTCTCTCTCTTGCCGGTGGGGTCCTCAGCTGGAACAAGCTACTTACAAGAATCGCCAGCGTCTATACCTCTCTGAGCAGACTGATGGAAGTGTTCCAAATACACTGGTCATTGCGAATTGTGAGGTTGTTAAGCCTAGGGTCGCAGCTGCAGAGCACATTTCACAGTTTAATGAAGAGGCGCGCTCTCCATTCGTCAAGAAGTATAAGACCATTATACATCCAGGAGAGGTGAATAGAATTAGGGAATTGCCGCAGAACTCTAAGATAGTGGCTACTCATACYGACAGCCCTGATGTCCTCATTTGGGATGTTGAAAGTCAACCTAATCGTCATGCTGTCCTTGGAGCTACAAATTCTCGTCCYGATTTGGTGTTGACTGGACACCAAGACAATGCGGAATTTGCCCTTGCAATGTGCCCAACTGAACCCTATGTGCTTTCAGGAGGAAAGGACAAAACGGTGGTGCTGTGGAGTATTGAAGACCATATAACATCTTCTGCCACAGACTCCAAATCTGGGGGATCCATTGTCAAATCAAACTCCAAATCTGGCGAAGGCAATGATAAATCTGCTGATGGCCCTTCTGTTGGACCACGAGGTATCTACTGTGGGCATGATGAAACTGTGGAGGATGTGACTTTCTGCCCTTCTAGTGCACAGGAGTTCTGTAGTGTTGGAGATGATTCTTGCCTCATATTATGGGATGCTCGTGTTGGCTCTAGTCCTGCAGTTAAGGTTGAAAAAGCGCATAATGCTGATCTTCATTGTGTTGACTGGAATCCACATGATGTTAATTTGATTCTTACTGGGTCAGCAGATCATTCTGTTCGCATGTTTGATCGCCGCAATCTCACCTCTAATGGAGTTGGAACACCAATCCATAAATTTGAGTGTCACAAAGCTGCTGTTCTTTGTGTTCAGTGGTCTCCAGACAAAGCATCTGTATTTGGAAGCTCGGCAGAAGATGGTCTCTTAAACATTTGGGACTATGAGAAGGTTGGTAAAAAAATAGAGCGCTCCGGAAAATCTGTAAGTTCTCCTCCAGGGTTGTTTTTCCAGCATGCAGGCCATAGGGACAAAGTAGTTGACTTCCACTGGAATGCACAGGATCCATGGACAATTGTTAGCGTCTCTGATGATTGTGAAAGTACTGGTGGAGGGGGAACATTACAGATATGGCGCATGAGTGATTTGATCTACAGACCGGAAGAGGAGGTTTTGGCGGAGCTGGAGAAATTCAAAAGCCACGTTGTGGCGTGTGCCTCGAAGACCGAAAAATGA 1539 0.4756 MESPPSAGAASPTVGKKKETRGRKPKPKPKDEQHTKTIKEGKKTPHQQHHQQHHHHQPSVDDKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVESQPNRHAVLGATNSRPDLVLTGHQDNAEFALAMCPTEPYVLSGGKDKTVVLWSIEDHITSSATDSKSGGSIVKSNSKSGEGNDKSADGPSVGPRGIYCGHDETVEDVTFCPSSAQEFCSVGDDSCLILWDARVGSSPAVKVEKAHNADLHCVDWNPHDVNLILTGSADHSVRMFDRRNLTSNGVGTPIHKFECHKAAVLCVQWSPDKASVFGSSAEDGLLNIWDYEKVGKKIERSGKSVSSPPGLFFQHAGHRDKVVDFHWNAQDPWTIVSVSDDCESTGGGGTLQIWRMSDLIYRPEEEVLAELEKFKSHVVACASKTEK* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2566 512 PANTHER WD40 REPEAT FAMILY 39 509 - -
Amo13g2566 512 MobiDBLite consensus disorder prediction 1 62 - -
Amo13g2566 512 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 62 128 IPR022052 -
Amo13g2566 512 Gene3D - 36 498 IPR015943 GO:0005515
Amo13g2566 512 ProSiteProfiles Trp-Asp (WD) repeats profile. 288 330 IPR001680 GO:0005515
Amo13g2566 512 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI4 39 509 - -
Amo13g2566 512 ProSiteProfiles Trp-Asp (WD) repeats profile. 382 417 IPR001680 GO:0005515
Amo13g2566 512 MobiDBLite consensus disorder prediction 252 274 - -
Amo13g2566 512 SMART WD40_4 326 366 IPR001680 GO:0005515
Amo13g2566 512 SMART WD40_4 375 415 IPR001680 GO:0005515
Amo13g2566 512 SMART WD40_4 433 480 IPR001680 GO:0005515
Amo13g2566 512 SMART WD40_4 281 321 IPR001680 GO:0005515
Amo13g2566 512 SMART WD40_4 204 244 IPR001680 GO:0005515
Amo13g2566 512 SMART WD40_4 150 189 IPR001680 GO:0005515
Amo13g2566 512 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 382 417 - -
Amo13g2566 512 Pfam WD domain, G-beta repeat 286 321 IPR001680 GO:0005515
Amo13g2566 512 Pfam WD domain, G-beta repeat 334 366 IPR001680 GO:0005515
Amo13g2566 512 Pfam WD domain, G-beta repeat 210 244 IPR001680 GO:0005515
Amo13g2566 512 Pfam WD domain, G-beta repeat 376 415 IPR001680 GO:0005515
Amo13g2566 512 MobiDBLite consensus disorder prediction 25 45 - -
Amo13g2566 512 SUPERFAMILY WD40 repeat-like 151 484 IPR036322 GO:0005515
Amo13g2566 512 ProSiteProfiles Trp-Asp (WD) repeats profile. 333 366 IPR001680 GO:0005515
Amo13g2566 512 MobiDBLite consensus disorder prediction 252 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2566 Amo-Chr13 47957128 47963369 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2566 K10752 - gmx:100779302 959.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2566 13 47957128 47963369 Amo03g1172 03 26978816 26984845 hybridization