Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2546 ATGATCAAGGGGAAGGACATATACAATGTTATTGCAGGCATTGTGCCCTTGTACGTGGCCATGTTCTTAGGTTATGGCTCAGTTCGGTGGTGGAAGATCTTAACGCCGGAGCAATGCTCCGGTGTCAACCGTTTCGTGTCGATGTTCGCGGCCCCTTTCCTGGCATTTAAGTTCATATCGGCCAACAACCCTTACAAGATGAACTTCAAGTTCTTGGCGGGAGACTCGTTACAAAAGGTTTTCGTTATGGTTGTGCTTTATATATGGAATCTAACGAGATTCGGGAATATGGACACAYGCATAATTATCTATGCCCTTTTTGCTTTGCCTAATACCCTAGTCATGGGMATTCCCTTAATGGAAGCAATGTACGGAAAATTCTCTACACCTCTCATMACTCAAATTGTTGTCTTGCAAAGCGTCATATGGAACACCGTCTTGTTGATTCTGTTCGAGTATAGGGCGGCTAAAATCCTCATCCAAGAGCAATTCCCCGACAACACGGCCGCCATTGCCACAGTGACGATAGATCCGGACGTAGAGTCCCTAGGCGGGGAGTCTCTGCAAGCTGACACGGACGTAGGACACGATGGAAAGCTTCATGTGGTGGTGAGAAGATCAGCATCCGTATCATCTAATAATACATCTTACAAGTCTTTTGAATTGCCTTCCTCAGCCTTATCTAGGGCTTCTTCAAGTGTTAGTGAAATCCATTCTATTTACTCGGCTAGAGAAACCCCGTTAAGATATCCAAGCTTTGAGAGTCCTCATATTATTAATTTGCCAAAAAGCATGTCCGTTGGTACTGTTTTAGAAGAGGATTTCAAGAGGCCAAAGAAATTCTGGGGTGGAAATCGCAAAAATAATAGTAGAGTTTCCTCTATTTGTACCAATGACGACAGTGTTGGATCTTCTAACGTTGTTGTTGCTGTTCCACACCACAGTGCTGCCTCCAGAGATGAGCCTGATGAATTGACTGAAACTAAAGAAAATTCGAGAAGTTCTTTAAGTGGGAGCTGGAAGAAGATGGAGAATATTGAAGAAAATGTTGAAAACAAAAAGAAACAAATGCCATCTGCGAGGGTCATGACGAAGCTCATTACAGTAATGGCTTATAGGAAGCTCTCATGGAACCCTAATACATGGGCAAGTGTTGTTGGCATCACGTGGTCCCTTATAGCATACAGGTGTCACATCAAAATGCCGTCCATAATTGAAGGTTCCATTACAATAGTGTCAAATACCGGTTTGGGTATGGCTATGTTTAGTCTAGGTCTATTCATGGCATTACAACCAAAGTTCATTGCTTGTGGAAAAAAGTGGGCAGCAATTTCTATGGGTGTTAGGTTCTTGGCTGGTCCGGCACTGATTGCTGCAACCTCAGCACCAATTGGTATCCGTGGAGATCTTTTACGAGTTGAAATTATTCAGGCTGCTCTACCCCAAGGTATCATTCCCTTTATATTTGCTAAAGAATACAATCTTTATCCAGATATCTTCAGTACTGCGGTTATCTTCGGAATGGTGGTTGCATTGCCCGTAACAATAATATACTACGTGCTTCTTGGGCTTTAA 1575 0.4298 MIKGKDIYNVIAGIVPLYVAMFLGYGSVRWWKILTPEQCSGVNRFVSMFAAPFLAFKFISANNPYKMNFKFLAGDSLQKVFVMVVLYIWNLTRFGNMDTXIIIYALFALPNTLVMGIPLMEAMYGKFSTPLITQIVVLQSVIWNTVLLILFEYRAAKILIQEQFPDNTAAIATVTIDPDVESLGGESLQADTDVGHDGKLHVVVRRSASVSSNNTSYKSFELPSSALSRASSSVSEIHSIYSARETPLRYPSFESPHIINLPKSMSVGTVLEEDFKRPKKFWGGNRKNNSRVSSICTNDDSVGSSNVVVAVPHHSAASRDEPDELTETKENSRSSLSGSWKKMENIEENVENKKKQMPSARVMTKLITVMAYRKLSWNPNTWASVVGITWSLIAYRCHIKMPSIIEGSITIVSNTGLGMAMFSLGLFMALQPKFIACGKKWAAISMGVRFLAGPALIAATSAPIGIRGDLLRVEIIQAALPQGIIPFIFAKEYNLYPDIFSTAVIFGMVVALPVTIIYYVLLGL* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2546 524 MobiDBLite consensus disorder prediction 316 330 - -
Amo13g2546 524 Coils Coil 343 363 - -
Amo13g2546 524 Pfam Membrane transport protein 10 519 IPR004776 GO:0016021|GO:0055085
Amo13g2546 524 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 267 - -
Amo13g2546 524 TIGRFAM 2a69: auxin efflux carrier 1 524 IPR014024 -
Amo13g2546 524 PANTHER AUXIN EFFLUX CARRIER COMPONENT 2 1 267 IPR033526 GO:0010315|GO:0010329
Amo13g2546 524 MobiDBLite consensus disorder prediction 311 347 - -
Amo13g2546 524 PANTHER AUXIN EFFLUX CARRIER COMPONENT 2 317 524 IPR033526 GO:0010315|GO:0010329
Amo13g2546 524 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 317 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2546 Amo-Chr13 46706433 46710011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2546 1 524 Organic Solute Cotransporters AT1G23080 42.788 1.41e-158 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2546 K13947 - gmx:100788935 482.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2546 13 46706433 46710011 Amo13g2546 13 46706433 46710011 ECH