Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2341 ATGCTAACCATTCCCAAATCCCTCGTAATCGTCACCGCCAATCACCCTAATAATCTCCCCAACCCTATCACTTCCCTCTTCCTCCCACACTCTCCGTTTCTCCCGCGGTTCGCACTCCGCGCATCCTCCCCCGTTTCGAAACGTCTCTTCTGGTGGACCAGAAAGCGAAACCCAAAACCATTTCAGTCGACAATGCCTGGTTCGTCTATGTTGGCGGAGTACGCGAAGTCGAACCGGTCAACGTGCAAGGTGTGCTCGAAGGCGATCGAGTCGAAGGCGCTGAGATTGGGCGCTGTCGCAAAGGGCAAAGGAGGGTTCGACATTACCAAATGGCACCACCTCGATTGCTTCCCTTTCCCCTCTGACTCTGAATCCCTCCTTGCTTCCCCTGAGGACGCTATCAAAGGCTTCTCCTCATTGAAGAGTACTGACCAGGAAGCTTTGAAGAAGATATTGGTAGCTGCACATGACAAGTCTCAAAAGAAGGTTGATAAAGCTATAGAGGACATACAAAAAGATGAAGGCAGGGATACAAAGCGAAGGAAGCTGTGTGAATCAGACATTGAAGCAGTAGAGGAAATTAACTTTTCAGTTTCTGAAGTGAAGAACAACTACAAGGATGCTACCCTCTTACCAAAATGGAAAGCATTTCAGACAGTCATATATCTTGAACGGGATGATGGCCTGAATGACTCAAGTAAAATTGCTGCATTTGATTTTGATGGGTGTCTTGCAAAAACTGCTGTGAATAAAGTGGGTGCAGACGCTTGGTCCCTCATGTATCCTTCAATTCCTGATAAACTACAAAGCTTATACAAGGATGGGTACAAGCTGGTAATTTTCACCAATGAATCCAATATTGAACGTTGGAAAAATAAGAGACAAGTAGCCGTGGACTCAAAAATTGGACGTCTCAATAATTTTATTGAGAAAGTGAAGGTTCCAATTCAGGTGTTTATTGCTTGTGGGGTAGGTAAAGGTAAAGCAGACGGAAAAGACGATCCTTTTCGCAAACCTAAATCAGGGATGTGGCATCTGATGCAGCAGCACTTAAACTCCGGCATTGCCATTGACATGGATCAATCATTTTATGTTGGTGATGCAGCTGGGAGAGAATCAGATCACAGTGATGCAGATATTAAATTTGCAGAGGCCATTGGTTTAAAATTTTTTGTCCCTGAAGAGTATTTCGATGCCTGA 1200 0.45 MLTIPKSLVIVTANHPNNLPNPITSLFLPHSPFLPRFALRASSPVSKRLFWWTRKRNPKPFQSTMPGSSMLAEYAKSNRSTCKVCSKAIESKALRLGAVAKGKGGFDITKWHHLDCFPFPSDSESLLASPEDAIKGFSSLKSTDQEALKKILVAAHDKSQKKVDKAIEDIQKDEGRDTKRRKLCESDIEAVEEINFSVSEVKNNYKDATLLPKWKAFQTVIYLERDDGLNDSSKIAAFDFDGCLAKTAVNKVGADAWSLMYPSIPDKLQSLYKDGYKLVIFTNESNIERWKNKRQVAVDSKIGRLNNFIEKVKVPIQVFIACGVGKGKADGKDDPFRKPKSGMWHLMQQHLNSGIAIDMDQSFYVGDAAGRESDHSDADIKFAEAIGLKFFVPEEYFDA* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2341 399 TIGRFAM HAD-SF-IIIA: HAD hydrolase, family IIIA 234 391 IPR006549 -
Amo13g2341 399 SMART zf_PARP_3 73 153 IPR001510 GO:0003677|GO:0008270
Amo13g2341 399 ProSiteProfiles Poly(ADP-ribose) polymerase zinc finger domain profile. 70 156 IPR001510 GO:0003677|GO:0008270
Amo13g2341 399 Pfam Polynucleotide kinase 3 phosphatase 234 397 IPR013954 -
Amo13g2341 399 SUPERFAMILY HAD-like 218 397 IPR036412 -
Amo13g2341 399 PANTHER BIFUNCTIONAL POLYNUCLEOTIDE PHOSPHATASE/KINASE 63 397 - -
Amo13g2341 399 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 70 161 - -
Amo13g2341 399 Gene3D - 63 182 IPR036957 GO:0003677|GO:0008270
Amo13g2341 399 CDD HAD_PNP 234 397 - -
Amo13g2341 399 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 73 151 IPR001510 GO:0003677|GO:0008270
Amo13g2341 399 Gene3D - 212 399 IPR023214 -
Amo13g2341 399 TIGRFAM DNA-3'-Pase: DNA 3'-phosphatase 224 397 IPR006551 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2341 Amo-Chr13 40395038 40400141 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2341 K08073 - gmx:100796730 486.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2341 13 40395038 40400141 Amo13g2341 13 40395038 40400141 ECH