Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2323 ATGGCCAACAGTAATCTCCCTCGAAGAATCATCAAGGAAACGCAGCGTTTGCTCAGTGAGCCAGCACCGGGAATTAGTGCTTCCCCTTCGGAAGATAATATGCGATATTTCAATGTCATGATCCTCGGGCCGACCCAGTCACCGTACGAAGGTGGAGTCTTCAAATTAGAGCTATTTTTGCCAGAAGAATATCCAATGGCTGCTCCAAAGGTTAGGTTTCTGACGAAAATATATCACCCAAACATTGACAAGCTTGGCAGGATATGTCTTGATATTCTTAAAGATAAGTGGAGTCCTGCCCTTCAGATACGCACCGTTCTTTTGAGTATTCAGGCTCTTTTGAGTGCACCAAACCCGGACGATCCACTTTCTGAGAATATTGCAAAGCACTGGAAATCAAATGAGGCCGAGGCTGTTGAAACAGCAAAGGAATGGACTCGATTATATGCAAGCGGTGCCTGA 462 0.4545 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVETAKEWTRLYASGA* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2323 153 SMART ubc_7 8 151 - -
Amo13g2323 153 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 151 IPR000608 -
Amo13g2323 153 SUPERFAMILY UBC-like 7 151 IPR016135 -
Amo13g2323 153 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
Amo13g2323 153 Gene3D Ubiquitin Conjugating Enzyme 1 152 IPR016135 -
Amo13g2323 153 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 35 2 150 - -
Amo13g2323 153 Pfam Ubiquitin-conjugating enzyme 9 145 IPR000608 -
Amo13g2323 153 CDD UBCc 7 146 IPR000608 -
Amo13g2323 153 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2323 Amo-Chr13 39990809 39995546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2323 8 118 Miscellaneous Gene Families AT3G17000 29.060 1.15e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2323 K10580 - gmx:100805631 310.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2323 13 39990809 39995546 Amo13g2323 13 39990809 39995546 ECH