Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2220 ATGGATCTTCTGCGCGACGCATATTACCATGCCTCAGACGACGAAGATCAGCCCAAACGTCAGAGGCTATCACTCTCGTCTTCTTCTTCTTCTTACCCTCCAAAACCCTATTTTCCTCCAACTCCTTCTCCATCTTCTTCTCTCAATCCAAATCCCATTCCTGGAAGCTATGTTTCAAAGAGACAACGAGCACTTCTCGCTCCTCTCCCTGACCCTGACCCTATCCCTCTCCCGCTTCACTCTTCGTCTACACATTCTGCCACAGGAAGTATCTCAGATGCTGATATACCACGTAATGTTTTATCATTACTGAAAAACAAACCGAAGTGTCATCAAAGCCTGAATCCGATGCCCGAAAAGCTATCTGCGGCTCTATGTGGGCATACCAAAGCCGTCAATGCTATACATTGGTCATCAACTCATGCTCATCTCCTGGCATCTGCTGGGATGGATCATACGGTTTGCATTTGGAATGTATGGAGCAGAGATCAGAAGAAGGCACGCATGTTGAACTTCCACAATGCAGCGGTGAAAGATGTGAAATGGTCTCCACAAGGGCTCTTTCTACTTTCATGTGGGTATGATCATACATCGAGATTGATCGACGTTGAAAAGGGATCAGAGACTCAGGTTTTCAAAGAAGATCAAGTTGTTGGAGCTATTAAGTTCAATCCGAACAATTCAAATCTTTTCCTTTCTGGGGGATCACAGGGCCATATCAAACTATGGGATATCAGAACTGGAAAAGCAGCGCATAACTATACTCGGAATTTAGGTCCTATTTTGGATGTTGAGTTTATGGTGAACGGGAAGCAATTCATTTCTTCTAGTGATGTATCTAGGAGCAATGTCAGCGAGAACTCTATCATTGTTTGGGATGCTTCAAGGGAGGTTCCGTTGTCTAATCAGGTTTATGCAGAAGCTTATACTTGTCCGTGTATAAGGTGCCATCCATTTGATTCGACTTTTGTTGCCCAATCAAATGGGAATTACATTGCTATTTTTACTGCCACCCCGCCTTACAGACTCAACAAATATAAGCGGTACGAGAGCCATGGTGTCTCTGGCTTTCCAATTACTTGCAACTTCAGCTTGGATGGGAAGAAGCTTGCCTCTGGGTCTTCAGATGGTTCTATTTACCTTTACGATTATCAGTCATCAAAAGTTTTAAACAAAATCAAGGCCTACGACCAAGCATGCATCGATGTCACCTTCCACCCTGCTCTACCTAACGTTATCGCTTCGTGCTCATGGGACGGAAGTATTTCTGTGTTTGACTTGCAAACATAA 1290 0.4403 MDLLRDAYYHASDDEDQPKRQRLSLSSSSSSYPPKPYFPPTPSPSSSLNPNPIPGSYVSKRQRALLAPLPDPDPIPLPLHSSSTHSATGSISDADIPRNVLSLLKNKPKCHQSLNPMPEKLSAALCGHTKAVNAIHWSSTHAHLLASAGMDHTVCIWNVWSRDQKKARMLNFHNAAVKDVKWSPQGLFLLSCGYDHTSRLIDVEKGSETQVFKEDQVVGAIKFNPNNSNLFLSGGSQGHIKLWDIRTGKAAHNYTRNLGPILDVEFMVNGKQFISSSDVSRSNVSENSIIVWDASREVPLSNQVYAEAYTCPCIRCHPFDSTFVAQSNGNYIAIFTATPPYRLNKYKRYESHGVSGFPITCNFSLDGKKLASGSSDGSIYLYDYQSSKVLNKIKAYDQACIDVTFHPALPNVIASCSWDGSISVFDLQT* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2220 429 ProSitePatterns Trp-Asp (WD) repeats signature. 145 159 IPR019775 -
Amo13g2220 429 ProSiteProfiles Trp-Asp (WD) repeats profile. 211 253 IPR001680 GO:0005515
Amo13g2220 429 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 17 425 - -
Amo13g2220 429 ProSiteProfiles Trp-Asp (WD) repeats profile. 363 392 IPR001680 GO:0005515
Amo13g2220 429 SUPERFAMILY WD40 repeat-like 115 425 IPR036322 GO:0005515
Amo13g2220 429 ProSiteProfiles Trp-Asp (WD) repeats profile. 170 211 IPR001680 GO:0005515
Amo13g2220 429 Pfam WD domain, G-beta repeat 218 244 IPR001680 GO:0005515
Amo13g2220 429 Pfam WD domain, G-beta repeat 349 383 IPR001680 GO:0005515
Amo13g2220 429 Pfam WD domain, G-beta repeat 124 158 IPR001680 GO:0005515
Amo13g2220 429 Pfam WD domain, G-beta repeat 168 201 IPR001680 GO:0005515
Amo13g2220 429 CDD WD40 121 426 - -
Amo13g2220 429 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 211 249 - -
Amo13g2220 429 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 125 159 - -
Amo13g2220 429 ProSiteProfiles Trp-Asp (WD) repeats profile. 125 167 IPR001680 GO:0005515
Amo13g2220 429 SMART WD40_4 386 426 IPR001680 GO:0005515
Amo13g2220 429 SMART WD40_4 247 293 IPR001680 GO:0005515
Amo13g2220 429 SMART WD40_4 118 158 IPR001680 GO:0005515
Amo13g2220 429 SMART WD40_4 344 383 IPR001680 GO:0005515
Amo13g2220 429 SMART WD40_4 163 202 IPR001680 GO:0005515
Amo13g2220 429 SMART WD40_4 205 244 IPR001680 GO:0005515
Amo13g2220 429 MobiDBLite consensus disorder prediction 1 21 - -
Amo13g2220 429 Gene3D - 104 426 IPR015943 GO:0005515
Amo13g2220 429 MobiDBLite consensus disorder prediction 1 91 - -
Amo13g2220 429 MobiDBLite consensus disorder prediction 33 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2220 Amo-Chr13 37610701 37617341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2220 218 429 Miscellaneous Gene Families AT5G08390 22.066 8.60e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2220 K24742 - gmx:100790592 603.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2220 13 37610701 37617341 Amo13g2220 13 37610701 37617341 ECH