Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2201 ATGGCGGGTCGAGGCAAAACATTAGGATCTGGCAACGCCAAGAAGGCCACCTCTCGGAGCAGCAAGGCCGGTCTTCAATTCCCCGTTGGTCGTATTGCCCGTTTCCTGAAGGCTGGAAAATACGCCGAACGGGTCGGTGCCGGCGCCCCCGTTTACCTCGCCGCCGTCCTTGAATACCTAGCCGCCGAGGTTCTTGAGTTAGCTGGGAACGCTGCGAGAGATAACAAGAAGACCAGAATTGTGCCACGTCACATTCAATTGGCGGTTAGAAATGACGAAGAGTTAAGCAAGCTTCTTGGAGATGTAACAATTGCCAACGGTGGTGTGATGCCCAACATTCACAACCTCTTGCTTCCTAAGAAGACCGGAACCTCGTCCAAGGCTGCTGGCGATGATGATTCTTAG 405 0.5358 MAGRGKTLGSGNAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSSKAAGDDDS* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2201 134 CDD H2A 9 121 IPR002119 GO:0000786|GO:0003677|GO:0030527
Amo13g2201 134 PANTHER HISTONE H2A.6 2 132 - -
Amo13g2201 134 MobiDBLite consensus disorder prediction 1 20 - -
Amo13g2201 134 Gene3D Histone, subunit A 1 129 IPR009072 GO:0046982
Amo13g2201 134 PRINTS Histone H2A signature 15 37 IPR002119 GO:0000786|GO:0003677|GO:0030527
Amo13g2201 134 PRINTS Histone H2A signature 44 59 IPR002119 GO:0000786|GO:0003677|GO:0030527
Amo13g2201 134 PRINTS Histone H2A signature 59 72 IPR002119 GO:0000786|GO:0003677|GO:0030527
Amo13g2201 134 PRINTS Histone H2A signature 73 87 IPR002119 GO:0000786|GO:0003677|GO:0030527
Amo13g2201 134 PRINTS Histone H2A signature 101 119 IPR002119 GO:0000786|GO:0003677|GO:0030527
Amo13g2201 134 PANTHER HISTONE H2A 2 132 IPR002119 GO:0000786|GO:0003677|GO:0030527
Amo13g2201 134 ProSitePatterns Histone H2A signature. 23 29 IPR032458 -
Amo13g2201 134 SUPERFAMILY Histone-fold 9 124 IPR009072 GO:0046982
Amo13g2201 134 Pfam C-terminus of histone H2A 93 127 IPR032454 -
Amo13g2201 134 Pfam Core histone H2A/H2B/H3/H4 11 90 IPR007125 GO:0003677
Amo13g2201 134 SMART h2a4 4 124 IPR002119 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2201 Amo-Chr13 36871519 36872866 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2201 K11251 - pop:7454400 238.424
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2201 13 36871519 36872866 Amo13g2201 13 36871519 36872866 ECH