Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2181 ATGGCTCCAGTTGCTCCTCGTTCCGGCGACGCCATCTTCGCTAACATCGAGCGTGTTAATGCGGAGCTTTTTACTCTAACGTATGGCGCGATTGTGCGTCAATTGCTCACGGATCTGGAAGAGGTTGAAGAGGTGAACAAGCAGCTTGAACAAATGGGTTATAACATTGGAATCCGTTTGATTGACGAATTTTTAGCAAAATCCAATGTCTCAAGGTGCGTTGATTTCAGAGAGACTGCTGATGTAATTGCAAAGGTTGGTTTTAAGATGTTCCTTGGTGTTACTGCATCTGTGAGCAACTGGGATGCTGAAGGTACATGTTGTAGTATCATTTTGGAGGATAATCCTTTGGTAGACTTTGTTGAGCTTCCTGACACCTGTCAAGGTCTTTACTATTGCAACATGTTAAGTGGTGTCATTAGAGGAGCCTTAGAGATGGTGTCAATGAAGACTGAGGTCACTTGGATCCGCGATGTGCTTCGAGGTGATGATGTGTTTGAGTTGCAGGTAAAACTTCTCAAGCAGGTCCCCGAGGAGTATCCATACAAGGATGATGAGTGA 561 0.4474 MAPVAPRSGDAIFANIERVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLEQMGYNIGIRLIDEFLAKSNVSRCVDFRETADVIAKVGFKMFLGVTASVSNWDAEGTCCSIILEDNPLVDFVELPDTCQGLYYCNMLSGVIRGALEMVSMKTEVTWIRDVLRGDDVFELQVKLLKQVPEEYPYKDDE* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2181 186 Gene3D Trafficking protein particle complex subunit 3 3 185 - -
Amo13g2181 186 CDD TRAPPC3_bet3 20 174 IPR016721 GO:0030008|GO:0048193
Amo13g2181 186 Pfam Transport protein particle (TRAPP) component 24 171 IPR007194 -
Amo13g2181 186 Coils Coil 32 52 - -
Amo13g2181 186 PANTHER TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 3 1 186 IPR016721 GO:0030008|GO:0048193
Amo13g2181 186 SUPERFAMILY Ligand-binding domain in the NO signalling and Golgi transport 18 176 IPR024096 -
Amo13g2181 186 PANTHER PROTEIN PARTICLE COMPLEX SUBUNIT, PUTATIVE-RELATED 1 186 - -
Amo13g2181 186 PIRSF TRAPP_1_Bet3 3 185 IPR016721 GO:0030008|GO:0048193
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2181 Amo-Chr13 36323280 36326000 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2181 K20302 - jre:108993490 360.533