Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2178 ATGGCTTCCACCACCATCTCCTCTCCCTCCTTCACCAAAACCGCAAGCCCTTCTTCTCTCCTCTCCCATAACACCGTGTTCCGCCTGAACCCCCAACAACATGCACGCAAAAACTTCAACCTCTCCCTCCGCGCATCCATGTCAGCATCATCACCATCACAACCACCGTACGATCTCCAGTCCTTCAAGTTCGAGCCAATCAGGGAGTCGATCGTGTCACGGGAGATGACCCGCAGGTACATGACAGACATGGTGACGCACGCCGACACCGACGTTGTGATCGTGGGTGCCGGTTCTGCCGGGCTGTCGTGCGCCTACGAGCTCAGCAAGAACCCGTCAATCAACATAGCCATCATTGAACAGTCTGTCAGTCCCGGTGGTGGCGCTTGGCTCGGTGGCCAACTTTTCTCTGCCATGGTAGTGCGTAAGCCGGCACATCTGTTCCTAGACGAGCTCGGCATTGAGTACGACGAGCAAGAGAACTACGTGGTGATCAAGCATGCAGCGTTGTTCACTTCAACCATCATGAGCAAGCTCCTCGCCCGCCCCAACGTGAAGCTATTCAACGCTGTGGCGGCCGAGGACTTGATAGTAAAGAACAACAGGGTTGGTGGTGTTGTGACAAACTGGGCCTTGGTGTCAATGAACCATGACACACAGTCATGCATGGACCCAAATGTGATGGAGGCTAAGGTTGTGGTTAGTTCATGTGGGCATGATGGGCCGTTTGGGGCCACAGGGGTTAAGAGACTCAAGAGCATTGGGATGATTGATAGTGTTCCTGGGATGAAGGCACTTGATATGAATGCTGCTGAGGATGCTATTGTCAAACTCACTCGGGAGATTGTTCCTGGAATGATTGTTACTGGCATGGAAGTTGCTGAGATTGATGGTGCCCCTAGAATGGGTCCAACATTTGGGGCAATGATGATATCTGGGCAGAAGGCAGCACATCTGGCTTTGAGAGCACTGGGACTCCCAAATGCTATGGACTACGCTGGAAACATCTCCCACCCTGAGCTTGTCCTTGCTGCTGCACAATCTCCTCATGTTGTTGATGCTTAA 1065 0.5277 MASTTISSPSFTKTASPSSLLSHNTVFRLNPQQHARKNFNLSLRASMSASSPSQPPYDLQSFKFEPIRESIVSREMTRRYMTDMVTHADTDVVIVGAGSAGLSCAYELSKNPSINIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGIEYDEQENYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKNNRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNAAEDAIVKLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALRALGLPNAMDYAGNISHPELVLAAAQSPHVVDA* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2178 354 Gene3D - 58 88 - -
Amo13g2178 354 PRINTS Adrenodoxin reductase family signature 91 113 - -
Amo13g2178 354 PRINTS Adrenodoxin reductase family signature 115 128 - -
Amo13g2178 354 PRINTS Adrenodoxin reductase family signature 259 272 - -
Amo13g2178 354 Pfam Thi4 family 73 306 - -
Amo13g2178 354 Gene3D - 89 333 IPR036188 -
Amo13g2178 354 TIGRFAM TIGR00292: thiazole biosynthesis enzyme 69 323 IPR002922 -
Amo13g2178 354 Hamap Thiamine thiazole synthase, chloroplastic [THI4]. 8 333 IPR027495 GO:0009228
Amo13g2178 354 PANTHER THIAMINE THIAZOLE SYNTHASE 1 354 - -
Amo13g2178 354 PANTHER THIAMINE THIAZOLE SYNTHASE, CHLOROPLASTIC 1 354 - -
Amo13g2178 354 SUPERFAMILY FAD/NAD(P)-binding domain 52 317 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2178 Amo-Chr13 36263790 36267275 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2178 K03146 - gmx:547462 566.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2178 13 36263790 36267275 Amo13g2178 13 36263790 36267275 ECH