Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1919 ATGGCTAGTGGTGGTGGAGTTGACTTTGAGGACTTGCTTCCGATGATGGCGACCAAGCTAGGAGGCGAGGGACTCATAAAAGAACTATGCAACGGTTTTGAGTTGCTGATGGACAAAGAGAAAGGTGTGATCACGTTGGAGAGCTTAAGGAGTAATGCTGCGGCGGTTCTTGGGATTGAGGATATGAAGGAGGACGAGCTTGTGAGCATGATGAGGGAAGGTGACATCGACGGCGACGGCTACCTTTCGCAGATGGAGTTCTGTGTCTTGATGTTCAGGTTGAGCCCTGAATTGATGGAAGAGTCTTGGTTTTTGATTGAACAGGCATTGCAAAATCATGATGATGAACTAGTTAGCAACAATAACAAGAACAAGAGCAATTCTTCTATTTCATGA 396 0.4596 MASGGGVDFEDLLPMMATKLGGEGLIKELCNGFELLMDKEKGVITLESLRSNAAAVLGIEDMKEDELVSMMREGDIDGDGYLSQMEFCVLMFRLSPELMEESWFLIEQALQNHDDELVSNNNKNKSNSSIS* 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1919 131 Pfam EF-hand domain pair 40 93 IPR002048 GO:0005509
Amo13g1919 131 SUPERFAMILY EF-hand 4 91 IPR011992 -
Amo13g1919 131 Gene3D - 7 124 - -
Amo13g1919 131 ProSiteProfiles EF-hand calcium-binding domain profile. 62 97 IPR002048 GO:0005509
Amo13g1919 131 SMART efh_1 66 94 IPR002048 GO:0005509
Amo13g1919 131 PANTHER CALCIUM-BINDING PROTEIN KIC 4 121 IPR044205 GO:0005509
Amo13g1919 131 ProSitePatterns EF-hand calcium-binding domain. 75 87 IPR018247 -
Amo13g1919 131 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 4 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1919 Amo-Chr13 28871818 28872936 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1919 8 111 EF-hand Containing Proteins AT4G27280 65.385 2.86e-45 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1919 K24345 - gmx:100527206 179.489