Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1906 ATGGGTACTTCTAATCCTAACATGCTGCTAAATTATGTTCCAGTTTATGTCATGCTCCCACTAGGAGTTGTGAATGTGAATAATGTGTTTGAAGACTCAGAAGGCCTAAAGAAACAACTATTGCAGCTAAAGGAAGCAGGCGTTGATGGCGTGATGGTTGATGTGTGGTGGGGGATCATAGAACTGAACGGTCCAAAACAATATGATTGGGGCACATATAGGAGCTTGTTCAAGCTGGTTCAAGAATGTGGCCTGAAACTGCAGGCAATAATGTCATTCCATCAATGTGGAGGGAATGTAGGAGATATTGTCAATATCCCAATTCCAAAATGGGTGCTTGACATTGGAGATTCGGATCCTGATATCTTTTACACCAATAGATCAGGTAACAGGAACATAGAGTATCTCACTATTGGCGTAGATAACCTCCCTCTTTTCCATGGTAGAACAGCCATCCAGATATACAGTGATTACATGAAGAGTTTCAAGGAAAACATGTCAGATTTTATAGAATCTGGACTAATTATAGACATTGAAGTTGGGCTTGGACCAGCAGGAGAGCTTAGATTCCCTTCTTATCCACAAAGTCAAGGATGGGAATTTCCTGGTATTGGGGAGTTTCAGTGCTATGACAAATATTTGAAGGCAGAGTTTAAAGCTGCTGCAGCTAAAGCTGGCCATGCTGAATGGGAACTGCCAGATGATGCAGGGTCTTACAATGATGTACCAGAATCTACTGAGTTCTTCAAATCAAATGGAACATACCTCACTGAGAAAGGGAAGTTCTTCTTAACTTGGTATTCCAACAAATTGCTGATCCATGGCGATCAGATCCTAGAGGAAGCCACCAAAGCTTTCCAGGGCTGCAATGTCACGATAGCAATTAAAGTCTCTGGAATTCATTGGTGGTACAAATCTGAAAGTCATGCTGCTGAGCTCACTGCTGGATATTACAACCTTCAAGATAGAGATGGGTACCGTCCTATTGCAAGGATGCTGACTCGTCATCATGCCATTTTGAACTTCACATGTCTTGAGATGAGGGACTCCGAACAAAGCTCTGATGCAAAGAGCGCACCGCAGGAACTTGTTCAGCAGGTATTGAGTGGAGGTTGGAGAGAAAAAATTGAAGTTGCTGGTGAAAATGCACTGCCAAGGTATGATGCTGCAGCTTACAACCAAATGATACTGAATGCTAGACCAAACGGTGTCAACAAAAATGGCCCCCCAAAACTAAGCATGTATGGGATAACATATCTCCGTCTTTCGGATGAACTACTGCAAAAATCAAATTTTGCTATATTCAAAAAATTCGTGCTAAAGATGCATGCAGATCAGGATTATGTTGAAGATCCTAACCAGTATAATCATGTCATAATTCCACTGAAGCCATCAGGACCGAAAATTCCCCTTGAGAAAATTCTTGAAGCAACCAAACCAATACCGCCATTCCCCTGGGACTCAGAGACAGACATGAAAGTTGATGGCTGA 1491 0.4219 MGTSNPNMLLNYVPVYVMLPLGVVNVNNVFEDSEGLKKQLLQLKEAGVDGVMVDVWWGIIELNGPKQYDWGTYRSLFKLVQECGLKLQAIMSFHQCGGNVGDIVNIPIPKWVLDIGDSDPDIFYTNRSGNRNIEYLTIGVDNLPLFHGRTAIQIYSDYMKSFKENMSDFIESGLIIDIEVGLGPAGELRFPSYPQSQGWEFPGIGEFQCYDKYLKAEFKAAAAKAGHAEWELPDDAGSYNDVPESTEFFKSNGTYLTEKGKFFLTWYSNKLLIHGDQILEEATKAFQGCNVTIAIKVSGIHWWYKSESHAAELTAGYYNLQDRDGYRPIARMLTRHHAILNFTCLEMRDSEQSSDAKSAPQELVQQVLSGGWREKIEVAGENALPRYDAAAYNQMILNARPNGVNKNGPPKLSMYGITYLRLSDELLQKSNFAIFKKFVLKMHADQDYVEDPNQYNHVIIPLKPSGPKIPLEKILEATKPIPPFPWDSETDMKVDG* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1906 496 PRINTS Plant beta-amylase signature 173 182 IPR001371 GO:0000272|GO:0016161
Amo13g1906 496 PRINTS Plant beta-amylase signature 329 339 IPR001371 GO:0000272|GO:0016161
Amo13g1906 496 PRINTS Plant beta-amylase signature 371 380 IPR001371 GO:0000272|GO:0016161
Amo13g1906 496 PRINTS Plant beta-amylase signature 385 394 IPR001371 GO:0000272|GO:0016161
Amo13g1906 496 PRINTS Plant beta-amylase signature 400 416 IPR001371 GO:0000272|GO:0016161
Amo13g1906 496 PRINTS Plant beta-amylase signature 418 432 IPR001371 GO:0000272|GO:0016161
Amo13g1906 496 PRINTS Plant beta-amylase signature 433 447 IPR001371 GO:0000272|GO:0016161
Amo13g1906 496 ProSitePatterns Beta-amylase active site 1. 94 102 IPR018238 GO:0000272|GO:0016161
Amo13g1906 496 Gene3D Glycosidases 3 496 - -
Amo13g1906 496 PANTHER BETA-AMYLASE 6 4 491 - -
Amo13g1906 496 SUPERFAMILY (Trans)glycosidases 9 491 IPR017853 -
Amo13g1906 496 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 47 61 IPR001554 GO:0000272|GO:0016161
Amo13g1906 496 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 68 86 IPR001554 GO:0000272|GO:0016161
Amo13g1906 496 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 90 111 IPR001554 GO:0000272|GO:0016161
Amo13g1906 496 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 183 205 IPR001554 GO:0000272|GO:0016161
Amo13g1906 496 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 255 274 IPR001554 GO:0000272|GO:0016161
Amo13g1906 496 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 291 307 IPR001554 GO:0000272|GO:0016161
Amo13g1906 496 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 308 319 IPR001554 GO:0000272|GO:0016161
Amo13g1906 496 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 326 349 IPR001554 GO:0000272|GO:0016161
Amo13g1906 496 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 363 385 IPR001554 GO:0000272|GO:0016161
Amo13g1906 496 Pfam Glycosyl hydrolase family 14 16 438 IPR001554 GO:0000272|GO:0016161
Amo13g1906 496 PANTHER - 4 491 IPR001554 GO:0000272|GO:0016161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1906 Amo-Chr13 28642214 28645342 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1906 3 494 Glycoside Hydrolase AT2G32290 67.748 0.0 709
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1906 K01177 - gmx:547931 860.907