Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1895 ATGGAATCTTGTTACTGCAATCTTGAAGTTGAGGTAAATGGAGAAGAGACCTTCATGGTTGACAAGGCTATTATTGCTCAATACTCAAGCAAGTTAGCTAGATTATTTGGAAAATCTAGTGGTCCCAGTGGGAAACTCAAAGTAATATTCCATGATTTTCCAGGGGGTGCTGAGGGTTTTGAGCTTATGCTAAAATTTTGTTACAACAATGGAAGCATTGACATGAACTCTTCCAATTTGTTACAAGCACATTGTGCTGCTGAGTACATGGAAATGAAGGATTCTGTTCTTGGTGTTCCTAATTTGTTGGAACAAACAGAGAAGTCACTTGAAGAAATAAGCTATTGGAGATGGTCTGAACTTTTGGTTGCTTTGAAACAGTGCCAGAATCTATCAACTGTGTTGGATTACTATTCTAATTCAATGATGCTGGAGAAGTGTATGGACACCATTGTTGGGAGAATGTTTCTTGCTAGTGAAGCAAGCCCATGCCCTTCAACTTGCTCAACTGATAGTTCTTCCGGTGGGGTCCGGTTTTCGTGTGATTCGAAGAGTACTGAGAGTATCAAGACGAGTAGCTTCAGTTCGCGTCCGTGTTGGTGGTTTGAGGATCTTGTTTTCTTAAATCCGGTTTTGGTTGAAATGTTGGTGAGGTCAATGATCACAAGAAAATTGGAACATGGTTTGATTAGTAGGTTTCTAATGTATTATCAAAAAGCAAGATTTTCAAGTACTATTGATGTGAGTGAGAAGATTAAGATCTTGGAAATGGTCATAGATATGCATTATGATATGGAGTACTACCATAATAGTTCAATCCCTTTTAAGACCTTGTTTGGGATTCTAAGAATTAGTTTGAGTTTGAACATAAGCAAAAGTTGTAGGCACAAGTTGGAGGCCATGATTGGTTCCAATTTGGATCAAGCAACTTTGGACAATTTGCTTGTTCCATCACCATATGGAATAAGTTACTTGTATGATGTGAAACTTGTTCTCAAGTTTCTAAAGGCGTTCTTGCGACGCGGCGGCGGCGTTGTTGCTCCCACTAGGATGAAGAAAGTTGCAAGCTTGATAGATTTGTACATAGCAGAGATAGCACCTGATCCTTCTTTAAGGCCTTCTAAGTTCTTGGCTCTTGCCACTGCAATTCCAGATTCTGCAAGAGACTCTTATGATGAGCTCTACCATGCCATGGACATGTACCTTGAGGTTCATGGTCAATTGTCAGAAGAAGAAAAGGTGAAGATATGTTGTGGATTAAACTATGATAAGCTTTCACCACAAGCTTGCATACACCTTTCTCAGAACACAAAATTCCCATCAAAATCAGCAGTTCAGGCTCTCATATCACAACAATCAAAGCTCAAAAACTTGATCCAATCTACTCCAGCTACATCACCATTACTCAATGGCTCATCACCCCCTTTCTGCTTTACAAATGTTAATGCACAAAAGGGAAACAAAGACAAAAGCAATGACCAAGTTGTGTTGTATTCTTCTACTGGAGACTTTGATGCTTCATCTGATAATGAGAGACTCAAGGCACATTTGCAAGGAATGCAATGGAGGGTTATGGAATTAGAGAAAATCTGTAAGAAAATGCAAACTCAGATGGCAAAGATCACAAAATCAAAAGTACCACCCAATAGTTATGCAAGATCTTTGCCTAAGCTCTGTTCATGA 1683 0.3928 MESCYCNLEVEVNGEETFMVDKAIIAQYSSKLARLFGKSSGPSGKLKVIFHDFPGGAEGFELMLKFCYNNGSIDMNSSNLLQAHCAAEYMEMKDSVLGVPNLLEQTEKSLEEISYWRWSELLVALKQCQNLSTVLDYYSNSMMLEKCMDTIVGRMFLASEASPCPSTCSTDSSSGGVRFSCDSKSTESIKTSSFSSRPCWWFEDLVFLNPVLVEMLVRSMITRKLEHGLISRFLMYYQKARFSSTIDVSEKIKILEMVIDMHYDMEYYHNSSIPFKTLFGILRISLSLNISKSCRHKLEAMIGSNLDQATLDNLLVPSPYGISYLYDVKLVLKFLKAFLRRGGGVVAPTRMKKVASLIDLYIAEIAPDPSLRPSKFLALATAIPDSARDSYDELYHAMDMYLEVHGQLSEEEKVKICCGLNYDKLSPQACIHLSQNTKFPSKSAVQALISQQSKLKNLIQSTPATSPLLNGSSPPFCFTNVNAQKGNKDKSNDQVVLYSSTGDFDASSDNERLKAHLQGMQWRVMELEKICKKMQTQMAKITKSKVPPNSYARSLPKLCS* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1895 560 ProSiteProfiles BTB domain profile. 6 70 IPR000210 GO:0005515
Amo13g1895 560 Pfam NPH3 family 200 430 IPR027356 -
Amo13g1895 560 Pfam BTB/POZ domain 4 97 IPR000210 GO:0005515
Amo13g1895 560 Gene3D Potassium Channel Kv1.1; Chain A 1 144 IPR011333 -
Amo13g1895 560 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN 12 560 - -
Amo13g1895 560 SUPERFAMILY POZ domain 3 96 IPR011333 -
Amo13g1895 560 ProSiteProfiles NPH3 domain profile. 199 454 IPR027356 -
Amo13g1895 560 PANTHER OS12G0117600 PROTEIN 12 560 IPR043454 -
Amo13g1895 560 SMART BTB_4 6 107 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1895 Amo-Chr13 28378649 28382512 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1895 18 540 EF-hand Containing Proteins AT3G44820 28.147 7.45e-58 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1895 - - adu:107477823 1085.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1895 13 28378649 28382512 Amo13g1895 13 28378649 28382512 ECH
Amo13g1895 13 28378649 28382512 Amo03g0711 03 13062845 13066401 hybridization