Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1863 ATGCCACAGTTACGCCGGAAAATTGAGCAATCTACGACGCTGCGGCGGCGGATCGAGAAGCGCGTTGTGGTTCTACGGCGGTGCTTCCTCCGTGTGCTCCACCACTTCATCACGTGCTCCGGCGGAAAGAACACGAAGCCAGCCAATGCCGCCACGTACCACGTACTTCCGGCCGATGCGGCGGCATTGCCRTCTCCTCGGCTGTTGGATGAAGCGGCTTCGCCACCAAAGTTTCATGCTCATGAGTTGGATCCCGATTTGGTTTCTTTGAAGATCACTTTGTTAGGTGATTCTCAAATTGGAAAAACCAGCTTCTTGGTGAAATATGTTGGGGATGAGAATGGGCAACAGGGTAAAGGGTTGAATCCGATGGACAAAACTTTGGATGTTAGAGGGGCACGTATTTCGTATTCAATCTGGGAAGTTCAAGGTGATTCAAAATCAATAGATCAAATTCCAGTGGCATGTACGGACTCTGTGGCAATCTTAATCATGTTTGATCTAACAAGCAGATTCACATTAAACAGTGTTCTAGGATGGTACACAGAAGCCAGGAAATGGAACCAGACTGCAATTCCAGTGTTGATAGGAACCAAGTTTGATGATTTCATTCAGCTCCCTATTGATATGCAATGGACCATTGCTAGTGAGGCAAGAGCATATGCTAAGGCCCTCAATGCCCCCTTGTTCTTTTCAAGTGCAACCTACAACATCAATGTGAACAAGATCTTCAAGTTCATCACTGCCAAACTCTTTGACCTACCATGGACAGTGGAGAGAAATCTAAATGTTGGGGAGCCTATCATTGATTTCTAA 816 0.4657 MPQLRRKIEQSTTLRRRIEKRVVVLRRCFLRVLHHFITCSGGKNTKPANAATYHVLPADAAALPSPRLLDEAASPPKFHAHELDPDLVSLKITLLGDSQIGKTSFLVKYVGDENGQQGKGLNPMDKTLDVRGARISYSIWEVQGDSKSIDQIPVACTDSVAILIMFDLTSRFTLNSVLGWYTEARKWNQTAIPVLIGTKFDDFIQLPIDMQWTIASEARAYAKALNAPLFFSSATYNINVNKIFKFITAKLFDLPWTVERNLNVGEPIIDF* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1863 271 Gene3D - 84 262 IPR027417 -
Amo13g1863 271 SMART rab_sub_5 90 254 - -
Amo13g1863 271 Pfam Ras family 91 251 IPR001806 GO:0003924|GO:0005525
Amo13g1863 271 PRINTS Transforming protein P21 ras signature 90 111 - -
Amo13g1863 271 PRINTS Transforming protein P21 ras signature 128 150 - -
Amo13g1863 271 PRINTS Transforming protein P21 ras signature 189 202 - -
Amo13g1863 271 PRINTS Transforming protein P21 ras signature 229 251 - -
Amo13g1863 271 ProSiteProfiles small GTPase Rab1 family profile. 84 271 - -
Amo13g1863 271 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 264 IPR027417 -
Amo13g1863 271 PANTHER MONOMERIC G-PROTEIN 45 270 - -
Amo13g1863 271 PANTHER - 45 270 - -
Amo13g1863 271 SMART rho_sub_3 92 253 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1863 Amo-Chr13 27564895 27568736 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1863 K07976 - gmx:100780638 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1863 13 27564895 27568736 Amo13g1863 13 27564895 27568736 ECH