Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1853 ATGTATAAATCCACCTCTTCCCTTCTCAGGGCTACAAGGTCCAAACTCTCTTCTTCTTCTAAAACGTTCGCTTATTCTCATTCTCGCACCTCTCCTTCGGTAACCGCCAACGCTGCGTCTTCTTCACGCGCTTTTACCTCCTCCGCCGCGCGTGCTTTCACCCGCTGGAGCCACCGCCTCGACTTCAGTTCTCCGATCAGCCTCCGCGCTCACGCCAGAGCCCTCGCTCCTCTTCTCCAACGTTTCCAACGCAGCTTGGCTTCCATGGCCAGTGAAAATCCATTCAAGGGAAACCTGACAAGTCTCCCCAAGCCTGGAGGTGGCGAGTTTGGAAAATTCTATAGCCTTCCTTCTCTCAATGATCCAAGAGTTGACAAGTTGCCGTATTCTATCAGAATTCTCCTTGAATCTGCCATTCGTAATTGTGACAATTTCCAAGTCAAGAAAGAGGATGTTGAGAAGATTATTGACTGGGAAAACACTTCCCCAAAGCAAGTTGAAATTCCTTTCAAGCCTGCGCGGGTCCTCTTGCAGGATTTTACTGGAGTCCCGGCTGTTGTTGACCTAGCTTGCATGCGTGATGCAATGAACAAGCTTGGCAGTGATTCTAATAAGATTAATCCTCTGGTTCCAGTTGATCTAGTCATTGATCATTCAGTTCAAGTTGATGTTGCAAGGTCAGAAAATGCAGTGCAGGCCAATATGGAGCTTGAATTCCAGAGAAACAAGGAGAGATTTGCTTTTCTAAAATGGGGGTCAACTGCATTCCGTAACATGCTCGTTGTTCCTCCTGGTTCTGGTATAGTACATCAGGTCAATCTTGAATATCTTGGACGGGTTGTTTTCAACAATGAAGGCATACTCTATCCTGACAGTGTGGTTGGGACTGATTCACATACAACTATGATAGATGGGCTTGGTGTTGCTGGATGGGGTGTTGGAGGTATTGAAGCTGAAGCAGCAATGCTTGGCCAGCCGATGAGTATGGTGTTGCCTGGTGTTGTTGGCTTCAAGTTGTCTGGAAAACTGCGCAATGGTGTTACAGCAACTGACTTGGTTCTAACTGTGACACAAATGCTTAGAAAGCATGGTGTTGTTGGAAAATTTGTTGAATTTTATGGTGATGGTATGGGTGAATTATCACTAGCAGATAGGGCCACTATTGCTAATATGTCTCCTGAATATGGTGCTACCATGGGTTTCTTCCCTGTGGATCATGTTACACTACAATATCTCAAGTTAACTGGTCGAAGTGATGAGACTGTGGCCATGATAGAGTCTTATCTCAGGGCAAACAACATGTTCGTTGACTATAATGAGCCACAACAAGACAGAGTTTATTCCTCGTATCTTGAATTAAACCTTTCAGATGTTGAACCATGTATCTCCGGACCAAAGAGACCTCATGATCGGGTGCCTTTGAAAGACATGAAAGCTGACTGGAAGTCTTGTCTTGATAACAAAGTTGGGTTTAAGGGATTTGCTATACCGAAAGAAGCACAAGGAAAAGTTGCAAAGTTTAATTTCCATGGGCAGCCAGCAGAGCTCAGGCATGGCAGTGTTGTGATTGCTGCAATCACAAGCTGTACTAATACATCAAACCCAAGTGTTATGCTAGGAGCTGGTCTTGTTGCGAAAAAGGCCCATGAGCTTGGTCTGAAGGTCAAGCCTTGGGTTAAAACTAGTCTTGCTCCAGGCTCAGGAGTTGTTACAAAATACCTTCTCCAGAGTGGACTGCAGAAACCTCTAAACGAACAAGGTTTTCATATAGTTGGATTTGGCTGTACTACATGTATTGGCAATTCAGGGGACCTGGATGAATCTGTTGCATCTGCCATCTCAGAAAATGACATTGTAGCAGCAGCTGTGTTGTCTGGGAACCGTAATTTTGAGGGCCGTGTGCATCCCTTGACTAGGGCTAACTACCTTGCCTCACCTCCTTTGGTTGTTGCTTATGCTCTTGCTGGCACGGTAGAYATTGACTTTGAGAAAGAGCCAATTGGAAAAGGCAAGGACGGCAAGGATGTGTACTTGAGGGATATCTGGCCATCTACTGAAGAAATTGCTCAGGCCGTGCAATCTAGTGTGTTGCCTGACATGTTCCGAAGTACATATGARTCCATTACCAAGGGCAATCCTATGTGGAATCAACTACAAGTTTCTACCGACAAACTTTACTCATGGGACCCCAGCTCAACATATATTCATGAACCTCCATACTTCAAGAACATGACCATGGAATCTCCRGGAGCTCATGGTGTCAAAGAKGCCTATTGCTTGCTGAATTTTGGGGACAGTATAACCACTGATCACATTTCTCCAGCTGGAAGCATTCACAAGGAAAGTCCTGCTGCTAAATACCTTATGGAGCGTGGGGTGGACCGCAAGGACTTCAACTCTTATGGAAGTCGCCGAGGGAATGATGAGATAATGGCAAGGGGAACTTTTGCCAACATTCGTCTTGTTAACAAGCTCTTGAATGGGGAAGTTGGCCCCAAGACAGTTCACATTCCTACCGGGGAAAAGCTATATGTGTTTGATGCGGCAATGAGATACAGAAATGCCGGGCAAGACACCATTGTGCTGGCTGGAGCTGAATATGGTAGTGGAAGTTCTAGGGATTGGGCAGCCAAGGGTCCAATGCTATTGGGTGTCAAAGCTGTGATAGCTAAAAGTTTTGAGAGAATTCATCGCAGCAATTTGGTAGGGATGGGTATTATTCCTCTTTGCTTCAAATCMGGTCAGGATGCGGAAACTTTGGGATTGACTGGTCATGAACGGTATACAATTGACCTTCCAAGTAAAATTAGCGAGATTAGGCCTGGCCAAGATGTCACTGTTACAACCGATAATGGAAAATCATTCACCTGCACAGTACGCTTTGACACCGAGGTGGAACTAGCTTACTTCGACAATGGAGGCATTCTTCCATACGTGATAAGGAATCTCATCAAGCAATCCAGCAGGGCCAAGCTCTTCTCTTCCTTCAACTCTTCTCTTTCTAGAACCTTCTATCCCACCGCCTCTCCTCCTCCTCAGATCGGAGCCCTCCCTCCACTCTTCCACCGCACCAACTCTCCCTCCCCCGCGAATGAAAAACCTTCCAACGGAAACTTGATTGGTCCCTCAAAACCCAGTGCTCGCGATTTCGGAAATCTTTATAGGGTTCCTGCTATCGGAAACCGAGTTAACAATCTTGGAAATGGTTCTACTAAGAAGGTCAATCTTTCGGACACCATTGCACTGGCTAGAGCTGGATATGGCATTGGTGCTGTCAAGGGTCCAATGCAATTGATGACCGGACGCGAAGTTGCAGATGGTCGATTGGTTAATCATTTCCGTGTTAAGAGTACTGTTGCAAGTTCCAACAATGAGACAAAGGCTTATGGTCTTCGACCGTTATCTCCTCATCTTCCTGTTTATGAACCACAGCTATCTTCCACACTTTCAATATTCAACAGAATCACTGGAGTCATCTTATCTGCTGTCATCTTGTTGTTTTACATGATATATATGAAAATGGGCTTGATCAGTCTCACCTTTGGTTCTTTCTATGATTTCCTGTTTTACTCATCAAAACTCAACCTGCTTGTTCTTGAGATTTCTGGCTTAGCCCTTACCTATCACACATATATGGGCATTCTTACATCCAACCCTTAA 3660 0.4525 MYKSTSSLLRATRSKLSSSSKTFAYSHSRTSPSVTANAASSSRAFTSSAARAFTRWSHRLDFSSPISLRAHARALAPLLQRFQRSLASMASENPFKGNLTSLPKPGGGEFGKFYSLPSLNDPRVDKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENTSPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMELEFQRNKERFAFLKWGSTAFRNMLVVPPGSGIVHQVNLEYLGRVVFNNEGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRNGVTATDLVLTVTQMLRKHGVVGKFVEFYGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMIESYLRANNMFVDYNEPQQDRVYSSYLELNLSDVEPCISGPKRPHDRVPLKDMKADWKSCLDNKVGFKGFAIPKEAQGKVAKFNFHGQPAELRHGSVVIAAITSCTNTSNPSVMLGAGLVAKKAHELGLKVKPWVKTSLAPGSGVVTKYLLQSGLQKPLNEQGFHIVGFGCTTCIGNSGDLDESVASAISENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGKGKDGKDVYLRDIWPSTEEIAQAVQSSVLPDMFRSTYESITKGNPMWNQLQVSTDKLYSWDPSSTYIHEPPYFKNMTMESPGAHGVKXAYCLLNFGDSITTDHISPAGSIHKESPAAKYLMERGVDRKDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTVHIPTGEKLYVFDAAMRYRNAGQDTIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKSGQDAETLGLTGHERYTIDLPSKISEIRPGQDVTVTTDNGKSFTCTVRFDTEVELAYFDNGGILPYVIRNLIKQSSRAKLFSSFNSSLSRTFYPTASPPPQIGALPPLFHRTNSPSPANEKPSNGNLIGPSKPSARDFGNLYRVPAIGNRVNNLGNGSTKKVNLSDTIALARAGYGIGAVKGPMQLMTGREVADGRLVNHFRVKSTVASSNNETKAYGLRPLSPHLPVYEPQLSSTLSIFNRITGVILSAVILLFYMIYMKMGLISLTFGSFYDFLFYSSKLNLLVLEISGLALTYHTYMGILTSNP* 1220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1853 1219 CDD SQR_TypeC_SdhC 1132 1214 - -
Amo13g1853 1219 Gene3D Aconitase, domain 3 461 684 IPR015931 -
Amo13g1853 1219 PRINTS Aconitase family signature 259 267 IPR001030 -
Amo13g1853 1219 PRINTS Aconitase family signature 302 317 IPR001030 -
Amo13g1853 1219 PRINTS Aconitase family signature 525 536 IPR001030 -
Amo13g1853 1219 PRINTS Aconitase family signature 364 377 IPR001030 -
Amo13g1853 1219 PRINTS Aconitase family signature 378 391 IPR001030 -
Amo13g1853 1219 PRINTS Aconitase family signature 460 474 IPR001030 -
Amo13g1853 1219 PRINTS Aconitase family signature 235 248 IPR001030 -
Amo13g1853 1219 PRINTS Aconitase family signature 288 301 IPR001030 -
Amo13g1853 1219 PRINTS Aconitase family signature 587 600 IPR001030 -
Amo13g1853 1219 TIGRFAM aconitase_1: aconitate hydratase 1 111 984 IPR006249 -
Amo13g1853 1219 MobiDBLite consensus disorder prediction 1024 1042 - -
Amo13g1853 1219 Pfam Aconitase C-terminal domain 785 912 IPR000573 -
Amo13g1853 1219 Pfam Succinate dehydrogenase/Fumarate reductase transmembrane subunit 1132 1214 IPR000701 GO:0016627
Amo13g1853 1219 Gene3D Aconitase, domain 3 92 460 IPR015931 -
Amo13g1853 1219 PANTHER ACONITATE HYDRATASE 54 986 - -
Amo13g1853 1219 MobiDBLite consensus disorder prediction 1015 1044 - -
Amo13g1853 1219 CDD AcnA_IRP_Swivel 762 932 IPR044137 -
Amo13g1853 1219 SUPERFAMILY Aconitase iron-sulfur domain 107 720 IPR036008 -
Amo13g1853 1219 Pfam Aconitase family (aconitate hydratase) 153 656 IPR001030 -
Amo13g1853 1219 ProSitePatterns Aconitase family signature 2. 587 600 IPR018136 -
Amo13g1853 1219 Gene3D Fumarate reductase/succinate dehydrogenase, transmembrane subunit 1117 1215 IPR034804 GO:0016020
Amo13g1853 1219 SUPERFAMILY LeuD/IlvD-like 725 984 - -
Amo13g1853 1219 CDD AcnA_IRP 174 658 - -
Amo13g1853 1219 SUPERFAMILY Fumarate reductase respiratory complex transmembrane subunits 1126 1214 IPR034804 GO:0016020
Amo13g1853 1219 Gene3D - 685 746 - -
Amo13g1853 1219 Gene3D Aconitase, domain 4 749 985 IPR015928 -
Amo13g1853 1219 PANTHER ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER 54 986 IPR006249 -
Amo13g1853 1219 ProSitePatterns Aconitase family signature 1. 521 537 IPR018136 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1853 Amo-Chr13 27403601 27427775 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1853 K01681 - gmx:100793264 1745.71