Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1811 ATGATCAACGGAAACAAGATGCGAGCGGCATTCATAATTGCGACTGTAACAGCAATCTCCATCTTCTTAACCGCAATGAACCGCAGAAGAATTCGTAACCGTAACAAGAAATCACCTTCGAGTTCGTGTTATTTACATTCCGAACCGAAGCCGCAGAGTTCCTTTAAGCGCGTCTTGGCGGATAATTCTTACACTCCTTTCAAGCACTTGAAGAATCCCAACGACTCTTCTAACAATGATAAAGCTTCAAATTTGCATCCATTTGAGGCAGCGATCACAGCATTGTTGAAAAATTCTTGGCCTGAAATTGAACTTACTACTGAGATTGTGGACATGGAAATGAATGATTCTTATGTTTGGGTCAATACAGAGCTGCAAGTAAAGGAATTGGCCAATGTGTTAAGCAAAGAGAGGTTCTTTGCTGTGGACACAGAACAACATAGCTTACGATCTTTTCTAGGTTTTACAGCATTGGTTCAGATTTCTACCCAGAAGAAAGATTATTTGGTTGACACAATCGCGCTACATGATCTAATGCCAATTCTTTGCCCAGTTTTTGCGGATCCTTCTATTTGTAAAGTGTTCCATGGAGCTGACAATGATGTTGTCTGGCTACAAAGGGACTTCCATATATATGTTGTTAATCTATTTGATACTTCAAAGGCATGCGAGGTGCTGTCAAAGCCACAGAAATCACTTGCTTATCTACTTGAAACTTACTGCAGTGTGACAACAAATAAATTATTACAGCGTGAAGACTGGAGACAGCGCCCCCTCTCAGCAGAAATGGTGCATTATGCACGAACAGATGCACACTATTTGTTGTATATTGCAAGCTGTTTGATTGCTGAGCTCAAACAACTTGACAATGAAAACTCTTGTGACGAGGACAAATTCCATTTTGTTCACGAGGCTAGTCGGCGTTCAAACATAACGTGTTTGCAACTTTATACAAAAGAAGTTGAAGCTTCTCCTGGTGATTCTGCTGCATCATCATTATTTTCTCGTCATGTGAGTGGTCAAGGCTTCACTTCAGTTTCCAATGAAACCCAGTTTCAGACTATTGTGAAGCAACTGTGTGGATGGAGAGACCTGATGGCTCGTATTCATGATGAGAGCTTAAAATATGTACTGTCTGACCAGGCAATTGTTGCTTTGGCAAGTCAACCTTTGTCAAGTGAATCCGAAATATACAATCTCATAGCTCAGGCTGATAACAATGTGGAAATGGGTCTCAATTTTTTCATCCATTCCCCATCTCCTGTTGTTTGCAGCCACTTGAGTGATATCCATCATATTCTTGCAGACAAGTTGATTAACCATGATCACATTTATTCATGGATTATTCAGAAGTGCCTGGGTCCAAATGGGACTTGTCCACTTTCTATATTTAATTATGCTTTGCTGTTTAACAGCAACTTAAAACCTAGTTTAGCTTATAAACCCTCTGGTCTAAAGAATCATAGACAGATATCCCGGAAAGCTTCTCGAGATTTGTTTGTCCAAAAATTCTCCTGTAAGGCTCCTGTTTATCATAACTGCCGGATATTTGCTAATGATGGGAGGCTGCTTTGTTACTGTGATAAGAAGAAGCTTGAGTGGTACCTAAGTCGGGATCTCGCAAAACTTGTTGATAAGGACCCACCGGCTATAATGCTTCTATTTGAACCCAAAGGTCGCCCAGAGGATGAAGACAATGATTTCTACATTCAGAGTAAGAGAAATATATGTGTTGGATGTGGTGAAGGAAGTCACTACTTACGGTACCGAATAATCCCATCCTGTTACAGAATGCATTTTCCTGAGCATTTAAAAAGCCATCGTTCTCATGATATTGTTCTACTCTGCGTGGATTGCCACGAAATTGCCCATGCGGCTGCAGAGAAGTACAAGAGAAAAATAGCTTCTGAGTTTGGAATTCCTCTGTTCGTTCAAAGGGTCGTTCATCCTGAACAAGAGCCTAATGTACAGATTGAGGAGGGTGTATCTCCATTACAGTTACGTATAGCAGCTATGGCTCTTATACGCCATGGACCAAGAATGCCTCAAAATCGCCGTGAAGAACTGACTGAGGTTGTGAAGAGATATTATGGAGGAAGGGAAATATCTGAGGAAGATCTAGAAAGAGCTCTGATAGTTGGCATGAGTCCTCATGAGAGAAGACGGTTTGAGAAGAAGAGGGGTTTCTCTTTCAGACATGTGGGTAAAATAACAGCAGTGTCTGAAGAGGAAAACCCTGCTGATTCCACAACCAGAATTAGTAATGGGGATGCATCAAAGTTTGGTTCCCTTGATGATGGTTCATGTGCAAATGAAGAAACAAGTAATGATGTAGATAGAGAACATTTGATGGTAAACGATGATTCAGGAAACCCTTCTTTAGCTTCTGATCTTGCAGTGGATGCATCTGTCTCTCCTGCTACTAAAAATGGGTACACAAGCTCATTTGAAATTGTGGATTATAGTGAAATTAGTGACTCTGCTACAAATGTTGATGGCACTAGTCTGAGTAAAAAGCAACCAAATGGAAGTGATGACTTATCTTATCCTCCCAAGGATGAAGAATCGACTCAAACTAAACATAATTCAAAACAATCACTCTTAGGACATGGACCGCATGGACAAGAAGTTGTAGAACATTTAATGAAGGAATATGGGGAAGAAGGCATTGGACAATTCTGTCAACGGTGGAGACAAGTATTTGTTGAAGCTGTAAATCCACGTTTTCTTCCTGCTGGTTGGGATGTAAAACACAGCGGAAGAAGGGACTTCGGTGAGTTCAGTGTATACAATCCTGGCAGAAGAGTTGGCGCTACTACTTAG 2823 0.4088 MINGNKMRAAFIIATVTAISIFLTAMNRRRIRNRNKKSPSSSCYLHSEPKPQSSFKRVLADNSYTPFKHLKNPNDSSNNDKASNLHPFEAAITALLKNSWPEIELTTEIVDMEMNDSYVWVNTELQVKELANVLSKERFFAVDTEQHSLRSFLGFTALVQISTQKKDYLVDTIALHDLMPILCPVFADPSICKVFHGADNDVVWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYCSVTTNKLLQREDWRQRPLSAEMVHYARTDAHYLLYIASCLIAELKQLDNENSCDEDKFHFVHEASRRSNITCLQLYTKEVEASPGDSAASSLFSRHVSGQGFTSVSNETQFQTIVKQLCGWRDLMARIHDESLKYVLSDQAIVALASQPLSSESEIYNLIAQADNNVEMGLNFFIHSPSPVVCSHLSDIHHILADKLINHDHIYSWIIQKCLGPNGTCPLSIFNYALLFNSNLKPSLAYKPSGLKNHRQISRKASRDLFVQKFSCKAPVYHNCRIFANDGRLLCYCDKKKLEWYLSRDLAKLVDKDPPAIMLLFEPKGRPEDEDNDFYIQSKRNICVGCGEGSHYLRYRIIPSCYRMHFPEHLKSHRSHDIVLLCVDCHEIAHAAAEKYKRKIASEFGIPLFVQRVVHPEQEPNVQIEEGVSPLQLRIAAMALIRHGPRMPQNRREELTEVVKRYYGGREISEEDLERALIVGMSPHERRRFEKKRGFSFRHVGKITAVSEEENPADSTTRISNGDASKFGSLDDGSCANEETSNDVDREHLMVNDDSGNPSLASDLAVDASVSPATKNGYTSSFEIVDYSEISDSATNVDGTSLSKKQPNGSDDLSYPPKDEESTQTKHNSKQSLLGHGPHGQEVVEHLMKEYGEEGIGQFCQRWRQVFVEAVNPRFLPAGWDVKHSGRRDFGEFSVYNPGRRVGATT* 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1811 940 Pfam 3'-5' exonuclease 118 284 IPR002562 GO:0003676|GO:0006139|GO:0008408
Amo13g1811 940 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 5 935 IPR045092 GO:0000175|GO:0000467
Amo13g1811 940 Gene3D - 48 323 IPR036397 GO:0003676
Amo13g1811 940 ProSiteProfiles HRDC domain profile. 349 429 IPR002121 GO:0003676
Amo13g1811 940 MobiDBLite consensus disorder prediction 830 872 - -
Amo13g1811 940 SUPERFAMILY HRDC-like 350 401 IPR010997 GO:0000166|GO:0044237
Amo13g1811 940 MobiDBLite consensus disorder prediction 740 796 - -
Amo13g1811 940 SMART 35exoneu6 118 286 IPR002562 GO:0003676|GO:0006139|GO:0008408
Amo13g1811 940 MobiDBLite consensus disorder prediction 743 758 - -
Amo13g1811 940 SUPERFAMILY Ribonuclease H-like 50 288 IPR012337 -
Amo13g1811 940 MobiDBLite consensus disorder prediction 830 844 - -
Amo13g1811 940 Gene3D HRDC domain 343 443 IPR044876 -
Amo13g1811 940 PANTHER PROTEIN RRP6-LIKE 3 5 935 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1811 Amo-Chr13 26093153 26100272 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1811 K12951 - gmx:100791485 1367.06