Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1716 ATGGGAAAGAACGATAGCCAGAAGACAGGGCTCGGGAGAGCCCTTGTGAAGCACCACAACAAGATGGTACAGCAGACCAAGGACAAGAACCGCTTCTACAAGAAGAAGTTTCTAGAATCGTTCACCGAAGTCTCCGATATCGAGGCCATTCTTGAACAATCTGAGGAGCTTCTAGAACAAGAGCTAGAAGAACCCACCTTCCTCCCTGATCGCACCGCCGCACCCGCCCTTGTAATCAATTTGGATCCAGGATCAGGTTCTGGTGACATGTTGACGCCTGAAGAGATGAGGGAGCAGCAAAAAAGGGAGGAGGCACTGCATGCTAGCAGTCTCAGAGTTCCGCGCAGGCCACCATGGAGTGCTGACATGTCGGTTGAGGAGCTTGATGCAAATGAAAGACAAGCGTTCTTGGCTTGGCGTCGCAACCTAGCAAGACTTGAGGAAAATAAGAAGCTCATTCTTACTCCATTTGAGAAAAATCTTGATATCTGGAGACAGCTCTGGCGGGTTGTTGAACGCAGTGATTTGCTTGTTATGGTGGTCGATTCTCGTGATCCCCTGTTCTATCGCTGTCCTGATCTTGAGGCTTATGCACGAGAGGTTGATGAGCATAAACGAACTCTGCTTTTGATTAATAAGGCAGATCTTCTACCTGCTTCTATCAGAGAGAAGTGGGCAGAATACTTTCGTGCTCATGATATTTTGTTCATTTTCTGGTCTGCTAAAGCTGCTTCTGCAGCTCTGGAATGCAAAAAGCTTGGTTCATCTCAGGAGGCTGTTAACACTGGGGGAACCAATAACCCAGATACAAAGATATATGGAAGGGATGAGCTCTTGGCACGTTTACAATCAGAGGCAGAAGAGATTGTTGAAATGAGGAGAAATTCAAGCTCCTCTGACACAGGGCCATCTAACATCAAAGCATCGGGTGAAAATGCTGCTGGTAATTCATCATCAAGTAATGTAATTGTGGGATTTGTTGGATATCCTAATGTGGGGAAAAGTTCAACCATCAATGCTCTTGTCGGTCAAAAAAGGGCTGGTGTCACCTCTACCCCGGGAAAAACAAAGCACTTCCAGACATTAATTATTTCTGACAAACTTACCCTTTGTGATTGCCCTGGATTAGTTTTTCCGTCATTCTCAAGCTCCAGATATGAGATGGTTGCTTGTGGAGTGCTGCCTATTGATAGGATGACTGAACACAGGGAGTCTGTCCAAGTTGTAGCCAATAGAGTCCCAAGACATGTCATAGAGGAGGTTTATAAAATCACTCTTCCAAAGCCTAAGCCGTATGAACCACAATCCCGGCCCCCTTTGGCATCCGAGCTTTTGAGAGCATATTGTGCATCTCGTGGCTATGTCTCCTCTAGTGGGCTGCCTGATGAAACTAGGGCTGCTCGTCAGATCCTGAAAGATTACATTGATGGGAAGCTGCCTCACTTCCAATTGCCCCCGGGTATGTTAAACGAAGAGCTGCCTGTGGAAGATCACATGGGACAACATGACTTGGCTAACTTGCATGAGTCAGATTCATCTGGTATTGAACAGTCTTCAGATGTTGAGAGCGAGGTTACACCAAATCTTGATCACATATTGGACGACCTCAATTCGTTTGACATGGCCAATGGACTTGCTTCAAAGAAAGTTACTGTCAAGAAAGCTAAGGCGTCGTCTCATAAGCACCATAAGAAGCCTCAGAGGAAGAAGGATCGTTCATGGAGGGCAGGGAATGATGATGGTGATGGCATGCCGGTTGCAGGATTCTTTCAGAAACCAGTAAATACTGGTCCTACGAAGGTCTGA 1806 0.464 MGKNDSQKTGLGRALVKHHNKMVQQTKDKNRFYKKKFLESFTEVSDIEAILEQSEELLEQELEEPTFLPDRTAAPALVINLDPGSGSGDMLTPEEMREQQKREEALHASSLRVPRRPPWSADMSVEELDANERQAFLAWRRNLARLEENKKLILTPFEKNLDIWRQLWRVVERSDLLVMVVDSRDPLFYRCPDLEAYAREVDEHKRTLLLINKADLLPASIREKWAEYFRAHDILFIFWSAKAASAALECKKLGSSQEAVNTGGTNNPDTKIYGRDELLARLQSEAEEIVEMRRNSSSSDTGPSNIKASGENAAGNSSSSNVIVGFVGYPNVGKSSTINALVGQKRAGVTSTPGKTKHFQTLIISDKLTLCDCPGLVFPSFSSSRYEMVACGVLPIDRMTEHRESVQVVANRVPRHVIEEVYKITLPKPKPYEPQSRPPLASELLRAYCASRGYVSSSGLPDETRAARQILKDYIDGKLPHFQLPPGMLNEELPVEDHMGQHDLANLHESDSSGIEQSSDVESEVTPNLDHILDDLNSFDMANGLASKKVTVKKAKASSHKHHKKPQRKKDRSWRAGNDDGDGMPVAGFFQKPVNTGPTKV* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1716 601 MobiDBLite consensus disorder prediction 295 317 - -
Amo13g1716 601 PANTHER GTPASE LSG1-1 1 569 - -
Amo13g1716 601 PANTHER LARGE SUBUNIT GTPASE 1 HOMOLOG-RELATED 1 569 IPR043358 GO:0003924
Amo13g1716 601 Coils Coil 275 295 - -
Amo13g1716 601 Coils Coil 44 64 - -
Amo13g1716 601 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 454 IPR027417 -
Amo13g1716 601 MobiDBLite consensus disorder prediction 550 601 - -
Amo13g1716 601 CDD HSR1_MMR1 163 379 - -
Amo13g1716 601 Pfam 50S ribosome-binding GTPase 324 380 IPR006073 GO:0005525
Amo13g1716 601 MobiDBLite consensus disorder prediction 291 317 - -
Amo13g1716 601 MobiDBLite consensus disorder prediction 1 26 - -
Amo13g1716 601 Gene3D - 383 486 IPR023179 -
Amo13g1716 601 MobiDBLite consensus disorder prediction 553 571 - -
Amo13g1716 601 PRINTS GTP1/OBG GTP-binding protein family signature 324 344 IPR006073 GO:0005525
Amo13g1716 601 PRINTS GTP1/OBG GTP-binding protein family signature 370 385 IPR006073 GO:0005525
Amo13g1716 601 Gene3D - 163 380 IPR027417 -
Amo13g1716 601 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 164 379 IPR030378 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1716 Amo-Chr13 24414168 24418113 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1716 K14539 - gmx:100817523 917.531