Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1678 ATGAGTGAGAGTAACAGCAACAGCAACGGGGTGAGCAATATCAACATCAACAACAACAACAACAATAACAACCACCACCACCACCACAGCAGCAGCAGCAGTAAGGAAGAGAAAGGCAGAGATCTGGGGCTGTACTTTCTAGAAGTGTGCCGGCGGAGGGGGGCGGGGGCGGAGGAGGGGGAAGAGAAGGCGGAGGAGGCCCCAAGCGAGCTCAACACCATCAACAGCTCCGGCGGATTCGTGGTGGTGTCGACGGACAAGCTGTCAGTTAAGTACACGAATGTGAACCTTCACGGCCACGACGTCGGCGTGATTCAGGCGAACAAGGCTGCTCCCACGAAGCTGCTCCTCTACTACTTCGAGATTTATGTGAAGGACGCCGGCGCCAAGGGCCAGATTGCCATCGGCTTCACCTCCGAGTCCTTCAAGATGCGTAGGCAGCCCGGGTGGGAGGCCAATAGCTGTGGATATCACGGGGATGATGGGCTTCTTTATCGTGGACATGGCAAAGGGGAACCCTTCGGCCCTACCTATACATCTGGCGATATTGTTGGCGCTGGAATCAACTATGCTGCCCAGGAATTCTTCTTCACTAAAAATGGGCAAGTTGTTGGCACAGTTTACAAGGACATGAAGGGTCCACTCTTTCCTACCATTGCTGTTCATAGCCAAAATGAAGAGGTGCATGTCAACTTTGGGCAGAAACCATTTACCTTTGACCTAAAGGAATTTGAAGTGCAAGAAAGAATGAAGCAACAACTGAAAATAGAGGAATTGCCTCTGACATCAAATGTTAGTTACGGAATTGTCCGTTCTTACCTGCTACACTATGGCTACGAAGATACCTTGAATTCATTTGATGTGGCTAGTAGAAGTACTGTTCCTCCTATATATATAGCTCAGGAGAATGGGGTTGATGAGCAGGAAATAATGTATGCATTGAATCACCGAAAGACTCTCCGGCAGCTAATCAGGGATGGGGAGATTGATACTGCATTTGGTAAATTGCGAGAATGGTATCCCCAGATTGTTGAGGACAATACATCAGCTATGTGCTTTCTGCTTCATTGTCAGAAGTTTATTGAATTAGTTCGGATTGGAGCATTGGAGGAGGCTGTCAAATATGGAAGAATAGAGTTGTCAAGCTTTTTTGGGTTGCCTGTCTTTGAGGACCTAGTTCAGGATTGTGTTGCTTTGTTGGCATACGAACAACCACTGGAATCCCCTGTAGGATATCTTCTAAAAGACTCTCAACGTGAAGTTGTAGCTGACACAGTCAATGCGTTGATCTTGTCGACAAATCCCAACATGAAAGAGTCCAAAAATTGCTTGCACTCGTATCTTGAGAGGTTACTTAGACAGCTAACTGCTTGTTGCTTGGAGAATAGATCTTTGAGTGGGGAGCAGGGAGAAGCTTTCCAACTTCATAGAGTGCTTAGCAGTGGTAAAAGAGGCTAG 1458 0.4746 MSESNSNSNGVSNININNNNNNNNHHHHHSSSSSKEEKGRDLGLYFLEVCRRRGAGAEEGEEKAEEAPSELNTINSSGGFVVVSTDKLSVKYTNVNLHGHDVGVIQANKAAPTKLLLYYFEIYVKDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGHGKGEPFGPTYTSGDIVGAGINYAAQEFFFTKNGQVVGTVYKDMKGPLFPTIAVHSQNEEVHVNFGQKPFTFDLKEFEVQERMKQQLKIEELPLTSNVSYGIVRSYLLHYGYEDTLNSFDVASRSTVPPIYIAQENGVDEQEIMYALNHRKTLRQLIRDGEIDTAFGKLREWYPQIVEDNTSAMCFLLHCQKFIELVRIGALEEAVKYGRIELSSFFGLPVFEDLVQDCVALLAYEQPLESPVGYLLKDSQREVVADTVNALILSTNPNMKESKNCLHSYLERLLRQLTACCLENRSLSGEQGEAFQLHRVLSSGKRG* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1678 485 ProSiteProfiles B30.2/SPRY domain profile. 49 237 IPR001870 -
Amo13g1678 485 PANTHER RAN-BINDING PROTEIN M HOMOLOG 58 483 - -
Amo13g1678 485 SUPERFAMILY Concanavalin A-like lectins/glucanases 75 239 IPR013320 -
Amo13g1678 485 Gene3D - 48 253 IPR043136 -
Amo13g1678 485 Pfam SPRY domain 118 234 IPR003877 GO:0005515
Amo13g1678 485 CDD SPRY_RanBP_like 103 233 IPR044736 -
Amo13g1678 485 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 313 371 IPR006595 -
Amo13g1678 485 SMART toby_final6 367 468 IPR013144 -
Amo13g1678 485 SMART SPRY_3 115 236 IPR003877 GO:0005515
Amo13g1678 485 MobiDBLite consensus disorder prediction 1 27 - -
Amo13g1678 485 Pfam CTLH/CRA C-terminal to LisH motif domain 315 457 IPR024964 -
Amo13g1678 485 MobiDBLite consensus disorder prediction 1 39 - -
Amo13g1678 485 PANTHER RAN BINDING PROTEIN 9-RELATED 58 483 - -
Amo13g1678 485 SMART ctlh 313 371 IPR006595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1678 Amo-Chr13 23323861 23330679 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1678 K23334 - gmx:100805319 788.489