Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1654 ATGGCTGACAGCGATTCTAACCCTCCTCCGCCTCCTGTTACCGTTACCGTTACACATAGCGAAACGGCGAACCCTGATGTGCCTGCTCTCGCTTTAGCTACAGAAGCTGAACCACTCCGTGATAACACCGCCAAAGACCTCCCACCTTCCCCGCCACTCCCTCAACCTGAACAACCAGCACCAGAAGAAGACACGTCAGCACCCGAGGCTGTCCAAGCTGACACTTGCCAACCGGAACAGGAAAAGGATGTGGTTGCAGTTGCAGAGCAGAATCCCAATCCCACTCCTCAAGAGCAAGAGCGCAGTGACAAGCTTCCGCAGAATCTGGTATCGTTCAAGGAAGAGAGCAATAGGGTTTCTGATCTCTCCGATTCCGAGAAAGCTTCCCTTGAAGAGTTCAAGAAGCTTCTAGCAGATTCCATTAAGGAGGACGTTTCCATATGGGGAGTCCCTCTCCTCAAGGACGAGAGAACTGACGTCATCCTCCTCAAGTTCCTCAGAGCCCGCGACTTCAAGGTCAAGGACGCATTCGCCATGATCAACAACACTCTCCGATGGAGAAAGGACTTCAACATCGACGCTCTCCTCGACGAAGATCTCGGCGATGACATGGACAAGGTCGTCTTCATGCACGGCCACTCCAGAGAGGGCCATCCTGTCTGCTACAACGTCTACGGCGAGTTCCAGAACAAGGACCTCTATGATAAGACCTTCTCCACCGAGGAAAAGAGAAACAACTTCCTCCGGTGGCGGATTCAGTTCTTGGAGAGGAGTATTAGGAAGCTTGACTTCACTCCCGGTGGCATCAATACCATTTTTCAAGTTAACGACCTCAAGAATTCCCCTGGCCCTGCCAAACGGGAGCTTCGTCTTGCCACCAAACAAGCTCTCCAATTGCTTCAGGATAACTACCCCGAGTTTGTTGCCAAACAGGTTTTTATCAATGCTCCCTGGTGGTATCTTGCATTTTATACCATGATCAGTCCATTCATGACGCAGAGGACCAAGAGCAAACTTGTGTTTGCAGGGCCATCCAGGTCTCCTGATATCCTTTTCAAGTATATTTCCCCGGAGCAAGTGCCAATTCAGTATGGAGGCCTAAGTGTAGATTTCTGTGACTGCAATCCAGATTTCAGTATGTCTGATCCTGTCACGGAAATTCCTCTTAAGCCGACCACGAAGCAAACTGTAGAGATCGCCATTTATGAGAAATGTATTATTGTCTGGGAGCTGCGAGTGGTTGGTTGGGAGGTTAGCTATAGTGCTGAGTTCAAGCCTGATGCTAAAGATGGATATGCAGTTATTATACAGAAGGCCACAAAGATGTCCCCAACTGATGAACCTGTTGTTTCCAATAGCTTTAAAGTTAGTGACCTGGGAAAATTATTGCTCACTATTGACAACTCCACCTTGAAAAAGAAGAGGCTTCTTTACAGGTTCAAGATCAAACCCTACTCTGACTGA 1464 0.4877 MADSDSNPPPPPVTVTVTHSETANPDVPALALATEAEPLRDNTAKDLPPSPPLPQPEQPAPEEDTSAPEAVQADTCQPEQEKDVVAVAEQNPNPTPQEQERSDKLPQNLVSFKEESNRVSDLSDSEKASLEEFKKLLADSIKEDVSIWGVPLLKDERTDVILLKFLRARDFKVKDAFAMINNTLRWRKDFNIDALLDEDLGDDMDKVVFMHGHSREGHPVCYNVYGEFQNKDLYDKTFSTEEKRNNFLRWRIQFLERSIRKLDFTPGGINTIFQVNDLKNSPGPAKRELRLATKQALQLLQDNYPEFVAKQVFINAPWWYLAFYTMISPFMTQRTKSKLVFAGPSRSPDILFKYISPEQVPIQYGGLSVDFCDCNPDFSMSDPVTEIPLKPTTKQTVEIAIYEKCIIVWELRVVGWEVSYSAEFKPDAKDGYAVIIQKATKMSPTDEPVVSNSFKVSDLGKLLLTIDNSTLKKKRLLYRFKIKPYSD* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1654 487 ProSiteProfiles GOLD domain profile. 377 482 IPR009038 -
Amo13g1654 487 PANTHER PATELLIN-1 55 142 IPR044834 GO:0008289
Amo13g1654 487 PANTHER PATELLIN-1 141 487 IPR044834 GO:0008289
Amo13g1654 487 MobiDBLite consensus disorder prediction 1 15 - -
Amo13g1654 487 PRINTS Cellular retinaldehyde-binding protein signature 161 183 - -
Amo13g1654 487 PRINTS Cellular retinaldehyde-binding protein signature 324 343 - -
Amo13g1654 487 SUPERFAMILY CRAL/TRIO domain 207 375 IPR036865 -
Amo13g1654 487 SMART sec14_4 202 369 IPR001251 -
Amo13g1654 487 SUPERFAMILY CRAL/TRIO N-terminal domain 116 199 IPR036273 -
Amo13g1654 487 MobiDBLite consensus disorder prediction 1 82 - -
Amo13g1654 487 Gene3D GOLD domain 388 482 - -
Amo13g1654 487 CDD SEC14 203 367 IPR001251 -
Amo13g1654 487 PANTHER PATELLIN-3 141 487 - -
Amo13g1654 487 PANTHER PATELLIN-3 55 142 - -
Amo13g1654 487 SMART CRAL_TRIO_N_2 158 183 IPR011074 -
Amo13g1654 487 Pfam CRAL/TRIO, N-terminal domain 130 182 IPR011074 -
Amo13g1654 487 MobiDBLite consensus disorder prediction 45 61 - -
Amo13g1654 487 Pfam CRAL/TRIO domain 205 366 IPR001251 -
Amo13g1654 487 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 197 366 IPR001251 -
Amo13g1654 487 Gene3D - 113 387 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1654 Amo-Chr13 22774821 22777506 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1654 162 361 Acyl Lipid Metabolism Gene Families AT5G47730 28.436 3.75e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1654 - - gmx:100804006 659.062