Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1624 ATGGATTTGATTATGATAGTGGTTGGTGCATTAATGTTATTAACGGTGACAGAGAGAAGCAGGGGTCACGATTATGGAGATGCATTATCGAAGAGTATATTGTTCTTTGAAGCTCAGAGGTCAGGGAAGTTGCCACCAACACAGAGGGTTACTTGGAGGAAGGATTCCGCCGTCCACGACGGCGATCAATTTCAGGAAGGCGTGTCCCACTTGTACCGCAAAGTTGACTTGGTTGGCGGTTACTACGACGCCGGCGACAACGTGAAGTTCAACTTTCCAATGGCATTCTCAACAAGCATGCTAGCATGGAGTGTGATACAGTTCGGGAGTTCCATGGGAGCAGAACGAAAGCACGCTTTAGAGGCTATTCGTTGGGGCGCGGAGTACTTGATGAAAGCAACTAGCGTCCCTGGCTATGTGGTTGTACAGGTTGGTGATCCGTACAGTGACCACAATTGTTGGCAGAGGCCTGAAGACATGGACACTTCTAGAACCTTCTATGCGGTTAGCAAGGAGTACCCTGGTTCTGAGGTTTCCGCGGAGATTGCAGCTGCGCTTGCAGCCTCTTCCATTGTCTTTAAACGATATCAACTTGCTTATTCTGCTAGGCTTCTCCGAAGAGCTAGAATGGTGTTTGAGTTTGCAGATAAGTATAGAGGATCTTACAATGACGGCCTTGGACACTGGGTATGCCCATTCTATTGTGATTATAGTGGCTACCAGGATGAATTGGTGTGGGGAGCAGCATGGTTGTTTAAGGCTACTAAAAACTCTTATTACCGGAAATACATTGACGAAAACATTCACAATCTCAAAACCTTCGCTGAATTTGGATGGGACTCCAAGGATGCTGGCATCAATGTGCTTCTTTCTACGCTTATGATTAATAATAGTAGTAACTCTAATGCGGACAAGTTTATCTGTTCTGTGCTACCTGAATCACCTTCCCTATCAGTTTCATACTCTCCAGGAGGACTTATGTTCAAACAAGGAGGGAGTAACTTGCAGCATGCAACGGCATTTTCATTTCTTTTCCTGGTTTATGCTGATTATTTGAACAAAGTTAACAGACAAGTTGACTGTGGGGGTAAAGCTTCTACAATATCCCCAACGCGACTTATACAATTTGCCAGAAGCCAGGTGGATTACATATTAGGAAGCAACCCATTGAAGATGTCATACATGGTAGGGTACGGAGAAAAGTATCCAAAAAGAATACATCACCGTGCATCTTCATTACCTTCCATAGATATGCAGCGTGGCCACATCGATTGCAAAGGAGGATCCTCTTATTTTCAAAGCCAGAACCCTAATCCCAATGTCCTTCTTGGAGCTCTAGTTGGGGGACCTGATATCAATGATCAATATGCTGATTCTCGATCCGATTTTGTGCACTCAGAACCTACAACCTATATAAATGCACCTTTTGTTGGTGCTTTGGCATATTTCAAATCACATTCATCCTCAAAACCAAATTAA 1479 0.4415 MDLIMIVVGALMLLTVTERSRGHDYGDALSKSILFFEAQRSGKLPPTQRVTWRKDSAVHDGDQFQEGVSHLYRKVDLVGGYYDAGDNVKFNFPMAFSTSMLAWSVIQFGSSMGAERKHALEAIRWGAEYLMKATSVPGYVVVQVGDPYSDHNCWQRPEDMDTSRTFYAVSKEYPGSEVSAEIAAALAASSIVFKRYQLAYSARLLRRARMVFEFADKYRGSYNDGLGHWVCPFYCDYSGYQDELVWGAAWLFKATKNSYYRKYIDENIHNLKTFAEFGWDSKDAGINVLLSTLMINNSSNSNADKFICSVLPESPSLSVSYSPGGLMFKQGGSNLQHATAFSFLFLVYADYLNKVNRQVDCGGKASTISPTRLIQFARSQVDYILGSNPLKMSYMVGYGEKYPKRIHHRASSLPSIDMQRGHIDCKGGSSYFQSQNPNPNVLLGALVGGPDINDQYADSRSDFVHSEPTTYINAPFVGALAYFKSHSSSKPN* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1624 492 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 456 474 IPR033126 -
Amo13g1624 492 PANTHER ENDOGLUCANASE 8 487 - -
Amo13g1624 492 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 383 409 IPR018221 -
Amo13g1624 492 Gene3D - 20 492 IPR012341 GO:0005975
Amo13g1624 492 SUPERFAMILY Six-hairpin glycosidases 23 489 IPR008928 GO:0005975
Amo13g1624 492 Pfam Glycosyl hydrolase family 9 25 480 IPR001701 GO:0004553|GO:0005975
Amo13g1624 492 PANTHER ENDO-1,4-BETA-GLUCANASE 8 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1624 Amo-Chr13 22100653 22103709 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1624 6 488 Glycoside Hydrolase AT1G70710 57.114 0.0 571
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1624 K01179 - gmx:100775752 715.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1624 13 22100653 22103709 Amo13g1624 13 22100653 22103709 ECH