Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1556 ATGGCATTTCACGTAGCTTGCCCAATTACATGTCGTAGAATTTGCTTCTGCGCCTTAGGGTTTCCGCGAGCTCTTCATGGAACTGAAGCTTCCAATGGCTTCCTCAACGACGTTGCCGCGCTCGGCGAATTCCTCTCCGACAATCGAAAGGACACGGCCACCGTCAAGGTTGCAGTTCCCAAGGTCGTACCACCTCCTCCGCCGCCGAATCCTACGCCGGATGGAGGAGTACCTGCCGCGGAAGAGGAGTCCGCATCGATGAAGGCAAAGCGCGTGGCACTGCAGCGGAAGGGAGCCGCCGCCATGATCGCCGCCGAGGAGTACGCTCGCCGGTTGGAGTCCGGTGATGTTGCGGATGCACCTGGAAATCCTGTTGGAGAAGAACCGTGCCAAGCTAATGCCAAAGTCTTTTGTCGAATGTGTAATCGTGTTGAAAACGAAGGAAGTGAGAGAGCAAAGAAGATGCTATCGTGTAAGAGTTGTAACAAGAAGTATCATAGGAACTGCTTGAGAAGTTGGGCACAAAATAGAGATTTATTTCATTGGAGCTCATGGACCTGCAGGGCTTGCCGAATTTGTGAGGCTTGCAGAAGGACAGGTGATCCAAGTAAGTTCATGTTTTGCAAAAGGTGTGATGGTGCTTACCATTGTTATTGTCTGCAACCTCCTCATAAGAATGTTAGTACTGGGCCATATTTGTGCCCAAAACACACAAGGTGTCACAGTTGTGGATCCAATGTTCCCGGAAATGGACTGAGTGTGAGGTGGTTTCTAGGGTACACCTGCTGTGATGCATGCGGAAGATTGTTTGTGAAAGGCAACTACTGTCCAGTCTGTTTGAAGGTTTACAGAGATTCAGAATCAACACCAATGGTTTGCTGTGATATTTGCCAGCGCTGGGTGCATTGTCACTGTGATAATATTAGTGATGAGAAATATCACCAATTTCAAGTGGATCGGAATTTGCAGTATAAATGTCCTACTTGTCGTGGGGAATGTTATCAGATCAAGGGACTTGAGGATGCAGTTCAAGAGCTTTGGAAGAGAAGAAATATTGCTGATAGAGATTTAATTGCCAGCTTGAGGGCTGCAGCTGGTTTGCCAACTCAGGAAGAAATATTTTCTATTTCACCATTTTCAGATGATGAGGATAGCGAGCCTTTGAAATTAAAGAGTGAATCTGGCCGTTCCTTTAAATTCTCTTTAAAGAATTTATCGAATAACTCACCCAAGAAGTTTAAGGATTATATAAAGAAATCTTCAAACAAAAATTCTAAGAAAAGGGACTCTCAGTCGGTTATGATTAATAAACCAGACATGCACTATAGTTTTGAAGGACAAAGCGATGTAAAATCTTTACATAGCTTGGATGATGATAAGAATGATGATATACAATCCCAAAGAAATGAAGGTCCTGAAGTTTATTCATCCCCTGCTGCTGGAAGCCTGAGCCAAACTGAAGTATCTTGTCCTATCAACAAGACAGGGATTTTGAAACATAAGTTTGTTGATGAGGTGATGGTTAGTGATGAAGAGAGGAAGCCCAGAGTTTTCCGAATAAAAAATAATAAGGCACATATACTGAATAGTGAAGATGAGATTGGAAAAGATGGTGATAAGGCTGAGAGTGTCAAAGGTAAGAAGTTGGTGATTAATTTGGGTGCACGGAAAATTAATGTGGCTAATTCTCCCCGCTCTGATACTTCAAGCTGCCAAAGGGATCAAGATCTGGTTACTGTTAATGGAAGTGAAGATATAAGCCAAGTAAGGAAAGGATTTGCATCAGATAGACATGATGGAGCCGCTAGACGTGTTGATGGTAAAGATAGAAGCAATGTTGACTCTGGCCAATCAAAACATTTAAAGGTTTCAGGTAGAGAAGAAAATTTCATTAAACTGGGGAAATTGAAGCCAGAAGTTCAGAAATTCACTCTACCATCTGGTAGAGGTGAGGTTCCTTTAGATCAAACTCGCATCTTGCAGGGAAAACGTGGTACTGATGCAAACGTGGAAGCAACACCAAGAGGTGAAAGAACATATCATCGGAGGCCGAAAGAAGGCATTTCTGATGCATATGATGGGACAGATAACAATCATAATCAAACACCTTCACATTCTTTGGCAAAAGATTCTAAACCACTACTCAGATTTAAATTCAAGAAACCTAGTGTAGAAAGTAAAAATTCTATTATTCAAGAGGAAGAAAAGACTACAATCAAGGGCCAGAGGTCAAAAAGGAAGAGACCTTCACCTTTCAAGGAGAAAGCATCATTTAATGAGGCTGGAGATGTAAATCAATCACAGACGGGAAATCTAATGGATGAAATCATGGATGCTAACTGGATATTGATGAAGTTGGGCAATGATGCAATTGGTAAAAGAGTTGAAGTTCATCACACATCGGACAATTCTTGGCATAAGGGAGAGGTTACTGATATAGTTGAAGGCTCATCGAAATTGTACGTTACCTTAGATGATGGGAAGATCAAGACCGTGGAACTCAGGAAGCAGGGAGTTCGCTTTGTTTCTCAAAAGCAGAAAAGGTCAAAGACATGA 2556 0.4261 MAFHVACPITCRRICFCALGFPRALHGTEASNGFLNDVAALGEFLSDNRKDTATVKVAVPKVVPPPPPPNPTPDGGVPAAEEESASMKAKRVALQRKGAAAMIAAEEYARRLESGDVADAPGNPVGEEPCQANAKVFCRMCNRVENEGSERAKKMLSCKSCNKKYHRNCLRSWAQNRDLFHWSSWTCRACRICEACRRTGDPSKFMFCKRCDGAYHCYCLQPPHKNVSTGPYLCPKHTRCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDICQRWVHCHCDNISDEKYHQFQVDRNLQYKCPTCRGECYQIKGLEDAVQELWKRRNIADRDLIASLRAAAGLPTQEEIFSISPFSDDEDSEPLKLKSESGRSFKFSLKNLSNNSPKKFKDYIKKSSNKNSKKRDSQSVMINKPDMHYSFEGQSDVKSLHSLDDDKNDDIQSQRNEGPEVYSSPAAGSLSQTEVSCPINKTGILKHKFVDEVMVSDEERKPRVFRIKNNKAHILNSEDEIGKDGDKAESVKGKKLVINLGARKINVANSPRSDTSSCQRDQDLVTVNGSEDISQVRKGFASDRHDGAARRVDGKDRSNVDSGQSKHLKVSGREENFIKLGKLKPEVQKFTLPSGRGEVPLDQTRILQGKRGTDANVEATPRGERTYHRRPKEGISDAYDGTDNNHNQTPSHSLAKDSKPLLRFKFKKPSVESKNSIIQEEEKTTIKGQRSKRKRPSPFKEKASFNEAGDVNQSQTGNLMDEIMDANWILMKLGNDAIGKRVEVHHTSDNSWHKGEVTDIVEGSSKLYVTLDDGKIKTVELRKQGVRFVSQKQKRSKT* 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1556 851 MobiDBLite consensus disorder prediction 594 619 - -
Amo13g1556 851 MobiDBLite consensus disorder prediction 693 708 - -
Amo13g1556 851 MobiDBLite consensus disorder prediction 61 75 - -
Amo13g1556 851 MobiDBLite consensus disorder prediction 412 434 - -
Amo13g1556 851 ProSiteProfiles Zinc finger PHD-type profile. 273 332 IPR019787 -
Amo13g1556 851 SUPERFAMILY FYVE/PHD zinc finger 131 193 IPR011011 -
Amo13g1556 851 MobiDBLite consensus disorder prediction 670 692 - -
Amo13g1556 851 MobiDBLite consensus disorder prediction 665 711 - -
Amo13g1556 851 ProSiteProfiles Zinc finger PHD-type profile. 135 193 IPR019787 -
Amo13g1556 851 MobiDBLite consensus disorder prediction 725 766 - -
Amo13g1556 851 CDD PHD_SF 137 190 - -
Amo13g1556 851 SUPERFAMILY FYVE/PHD zinc finger 274 330 IPR011011 -
Amo13g1556 851 MobiDBLite consensus disorder prediction 411 487 - -
Amo13g1556 851 ProSitePatterns Zinc finger PHD-type signature. 138 190 IPR019786 -
Amo13g1556 851 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 332 IPR013083 -
Amo13g1556 851 PANTHER HISTONE ACETYLTRANSFERASE 2 845 - -
Amo13g1556 851 SMART PHD_3 192 238 IPR001965 -
Amo13g1556 851 SMART PHD_3 137 191 IPR001965 -
Amo13g1556 851 SMART PHD_3 275 330 IPR001965 -
Amo13g1556 851 MobiDBLite consensus disorder prediction 61 84 - -
Amo13g1556 851 MobiDBLite consensus disorder prediction 725 741 - -
Amo13g1556 851 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 247 IPR013083 -
Amo13g1556 851 SUPERFAMILY FYVE/PHD zinc finger 182 243 IPR011011 -
Amo13g1556 851 PANTHER PHD FINGER FAMILY PROTEIN 2 845 - -
Amo13g1556 851 MobiDBLite consensus disorder prediction 468 487 - -
Amo13g1556 851 MobiDBLite consensus disorder prediction 451 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1556 Amo-Chr13 21075524 21081521 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1556 - - gmx:100815407 1261.51