Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1490 ATGGATGGTTACGAAGCAACTAGGATAGTGTTCTCAAGGATCCAAAGCATGGACCCTGAAAACGCTTCAAAAATCATGGGTCTTCTTCTGATTCAAGACCATGGTGAGAAGGAGATGATTAGGTTAGCATTTGGACCAGAAGCTTTACTTCACTCTGTGATTTCCAAAGCTAGAAAAGACTTAGGTTTACCTTCAAACTCTCCTCCTACACCTTCAACTCCACCATCTCCATCACCTTTTCTTTCAGCTTCTACCAACCCGGTTAACATTTCAAGGCAGAACTCAACTTCTTCTTCTTCAAGGCTTGGTAGTGGGATGAACCTTCCACCTGCTCTAACCATACCAAACCCTTCTTCTTCTTCTTCAGCTTCTTGGGCTGCCATGTCTGACCTTCAAAACCCTGAGGACTTGATGAGTCCTAACAACTTGGTTGTTGGTTCTTCTTCCACAACTTCATCTTCTCTACCCTTTTATGCAAATGGAGGGTCAGATCCAATTGATGAGTACCAGTTACAGGACCAGCTTTCATTCTTGAATGATGGTTCTCCAAATTCTACTCTTGCTGCGGCTGCTTGTGGTGGTTCACACCATAACAAGAGCCATGATTTGTTCTACCCTCACTCAGACATGGCTTCTAGTCCTACTGGTGCTGGTGACCCCTCTTTGTTCCCTTCTTATGGCTGGGGAGGGCCTCTTCATAGGAGAAGTTGTTCAGTGAATGATGCTTGTTTGGCTTCGGAGGATCCCAATTCCGGGTTTGGTTGGAAGCCTTGTCTTTACTTTGCTAGAGGGTACTGCAAGAATGGCACTAGCTGCAGGTTCCTCCATGGTGGTGGACTTGGAGAAGCTGATGGTGCTGCTGCTGCTGCAATGGTTGGTTCTCCAAGCAAGATTGAGATGATGGAGCAGTGTCATGAACTTCTCAGATCTAAAACTGCTCAGCAACAAAGACTTCAACTCATGGCATCTTCAAGCTTTCCTTACTCTTCAAAGTGCATGAATTTCCTCTTACAACAACAGCAGCAGCAGCAGCAAAATGATACTCAAAGGGCTGCGGCTGCGGCTTTGATGATGAGCGAGGACTTACACAAATTCGGAAGATCGAGGCTTGAAAGGAGTGATTTCTCTTTGAACAGCCCTGGCATGGTCAACCCAGCTTCCAGGCAGATCTATTTGACTTTCCCAGCTGACAGCACTTTCAGAGAGGAAGATGTTTCCAACTACTTCAGCATTTATGGGCCAGTTCAAGATGTGAGAATCCCATACCAGCAGAAGCGCATGTTCGGATTTGTTACATTCGTTTATCCGGAGACTGTGAAGCTCATTCTCTCAAAAGGGAACCCTCATTTTGTGTGTGATGCAAGAGTGCTTGTTAAGCCTTACAAGGAGAAGGGCAAAGTTCCAGACAAGTACAGGAAGCAACAGCAACAGGTAGATAGGGATTTTTCACCTTGTGGCACTCCTACTGGACTAGATGCTAGAGACCAATATGATCTCCAACTAGGAGGGAGAATGTTCTACAACACTCAAGACATGCTTTGGAGGAGGAAGATGGAGGAGCAGGCTGATTTGCAGCAAGCTCTTGAGCTCCAAAGTAGGAGGTTGATGGGTCTGCAGCTCCTTGACATCAAGAAGCAGCACCATCATCGCGCCCTCTCCGCCGGAAGTCCGATACCATCCCCAACACACTCTCCTAACATGTTCAACCAAACCCTTGTTCATCATTCGTTTCACGGCACCCCGGATTCGCCGGAGGAGAATGGATCAGCTTCTGCTCCAAGTAGCACGGCACCGGTTTCGGTTATTGGTCAACAGACAGTCAACATATCTGTTGGCAAGGAAGTTGGAACCAATAATGGAGAGAATGGATATAGTGAAGGCAATGGCAATGGCAAGCAAAGTTCAAGTCATGAAGACAGTGATCTACAAGAATGTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCACCTACAAAAGCTGCTGTTGGAGATTACATGGCTGCCTTCAACAATGGACCTAATGAGGCCATTGATGCAGATCCCTCAGCTTCTTCTGCCAACTCCAAATTTGGAACTAGCTCTCTACTTCCATCAGCATCTGCTCTTGACATGGGTTCATTCAAATCCTTTAACTGCCAAATACCTAGGTTCTCTTCTGGCCATGGAACTATTGGGATGTTAGCCGGGACCGGCGGCGCCATCGGCATTTAG 2214 0.4661 MDGYEATRIVFSRIQSMDPENASKIMGLLLIQDHGEKEMIRLAFGPEALLHSVISKARKDLGLPSNSPPTPSTPPSPSPFLSASTNPVNISRQNSTSSSSRLGSGMNLPPALTIPNPSSSSSASWAAMSDLQNPEDLMSPNNLVVGSSSTTSSSLPFYANGGSDPIDEYQLQDQLSFLNDGSPNSTLAAAACGGSHHNKSHDLFYPHSDMASSPTGAGDPSLFPSYGWGGPLHRRSCSVNDACLASEDPNSGFGWKPCLYFARGYCKNGTSCRFLHGGGLGEADGAAAAAMVGSPSKIEMMEQCHELLRSKTAQQQRLQLMASSSFPYSSKCMNFLLQQQQQQQQNDTQRAAAAALMMSEDLHKFGRSRLERSDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKYRKQQQQVDRDFSPCGTPTGLDARDQYDLQLGGRMFYNTQDMLWRRKMEEQADLQQALELQSRRLMGLQLLDIKKQHHHRALSAGSPIPSPTHSPNMFNQTLVHHSFHGTPDSPEENGSASAPSSTAPVSVIGQQTVNISVGKEVGTNNGENGYSEGNGNGKQSSSHEDSDLQECLEHNLPDSPFASPTKAAVGDYMAAFNNGPNEAIDADPSASSANSKFGTSSLLPSASALDMGSFKSFNCQIPRFSSGHGTIGMLAGTGGAIGI* 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1490 737 SMART c3hfinal6 254 278 IPR000571 GO:0046872
Amo13g1490 737 SUPERFAMILY CCCH zinc finger 255 277 IPR036855 GO:0046872
Amo13g1490 737 MobiDBLite consensus disorder prediction 82 126 - -
Amo13g1490 737 MobiDBLite consensus disorder prediction 574 636 - -
Amo13g1490 737 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 257 277 IPR000571 GO:0046872
Amo13g1490 737 MobiDBLite consensus disorder prediction 467 489 - -
Amo13g1490 737 MobiDBLite consensus disorder prediction 60 126 - -
Amo13g1490 737 Gene3D - 331 478 IPR012677 -
Amo13g1490 737 SMART rrm1_1 389 459 IPR000504 GO:0003723
Amo13g1490 737 ProSiteProfiles Zinc finger C3H1-type profile. 252 279 IPR000571 GO:0046872
Amo13g1490 737 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 725 - -
Amo13g1490 737 MobiDBLite consensus disorder prediction 67 81 - -
Amo13g1490 737 MobiDBLite consensus disorder prediction 574 642 - -
Amo13g1490 737 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 400 445 IPR000504 GO:0003723
Amo13g1490 737 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN-RELATED 1 725 - -
Amo13g1490 737 Gene3D - 245 330 - -
Amo13g1490 737 CDD RRM_AtC3H46_like 390 459 IPR034365 -
Amo13g1490 737 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 388 464 IPR000504 GO:0003723
Amo13g1490 737 SUPERFAMILY RNA-binding domain, RBD 400 482 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1490 Amo-Chr13 20040480 20045121 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1490 - - adu:107477482 1352.42