Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1463 ATGGATGGTTACGAAGCAACTAGGATAGTGTTCTCAAGGATCCAAAGCATGGACCCTGAAAACGCTTCAAAAATCATGGGTCTTCTTCTGATTCAAGACCATGGTGAGAAGGAGATGATTAGGTTAGCATTTGGACCAGAAGCTTTACTTCACTCTGTGATTTCCAAAGCTAGAAAAGACTTAGGTTTACCTTCAAACTCTCCTCCTACACCTTCAACTCCACCATCTCCATCACCTTTTCTTTCAGCTTCTACCAACCCGGTTAACATTTCAAGGCAGAACTCAACTTCTTCTTCTTCAAGGCTTGGTAGTGGGATGAACCTTCCACCTGCTCTAACCATACCAAACCCTTCTTCTTCTTCAGCTTCTTGGGCTGCCATGTCTGACCTTCAAAACCCTGAGGACTTGATGAGTCCTAACAACTTGGTTGTTGGTTCTTCTTCCACAACTTCATCTTCTCTACCCTTTTATGCAAATGGAGGGTCAGATCCAATTGATGAGTACCAGTTACAGGACCAGCTTTCATTCTTGAATGATGGTTCTCCAAATTCTACTCTTGCTGCGGCTGCTTGTGGTGGTTCACACCATAACAAGAGCCATGATTTGTTCTACCCTCACTCAGACATGGCTTCTAGTCCTACTGGTGCTGGTGACCCCTCTTTGTTCCCTTCTTATGGCTGGGGAGGGCCTCTTCATAGGAGAAGTTGTTCAGTGAATGATGCTTGTTTGGCTTCGGAGGATCCCAATTCCGGGTTTGGTTGGAAGCCTTGTCTTTACTTTGCTAGAGGGTACTGCAAGAATGGCACTAGCTGCAGGTTCCTCCATGGTGGTGGACTTGGAGAAGCTGATGGTGCTGCTGCTGCTGCAATGGTTGGTTCTCCAAGCAAGATTGAGATGATGGAGCAGTGTCATGAACTTCTCAGATCTAAAACTGCTCAGCAACAAAGACTTCAACTCATGGCATCTTCAAGCTTTCCTTACTCTTCAAAGTGCATGAATTTCCTCTTACAACAACAGCAGCAGCAGCAGCAAAATGATACTCAAAGGGCTGCGGCTGCGGCTTTGATGATGAGCGAGGACTTACACAAATTCGGAAGATCGAGGCTTGAAAGGAGTGATTTCTCTTTGAACAGCCCTGGCATGGTCAACCCAGCTTCCAGGCAGATCTATTTGACTTTCCCAGCTGACAGCACTTTCAGAGAGGAAGATGTTTCCAACTACTTCAGCATTTATGGGCCAGTTCAAGATGTGAGAATCCCATACCAGCAGAAGCGCATGTTCGGATTTGTTACATTCGTTTATCCGGAGACTGTGAAGCTCATTCTCTCAAAAGGGAACCCTCATTTTGTGTGTGATGCAAGAGTGCTTGTTAAGCCTTACAAGGAGAAGGGCAAAGTTCCAGACAAGAAGCAACAGCAACAGGTAGATAGGGATTTTTCACCTTGTGGCACTCCTACTGGACTAGATGCTAGAGACCAATATGATCTCCAACTAGGAGGGAGAATGTTCTACAACACTCAAGACATGCTTTGGAGGAGGAAGATGGAGGAGCAGGCTGATTTGCAGCAAGCTCTTGAGCTCCAAAGTAGGAGGTTGATGGGTCTGCAGCTCCTTGACATCAAGAAGCAGCACCATCATCGAGCCCTCTCCGCCGGAAGTCCGATACCATCCCCAACACACTCTCCTAACATGTTCAACCAAACCCTTGTTCATCATTCGTTTCACGGCACCCCGGATTCGCCGGAGGAGAATGGATCAGCTTCTGCTCCAAGTAGCACGGCACCGGTTTCGGTTATTGGTCAACAGACAGTCAACATATCTGTTGGCAAGGAAGTTGGAACCAATAATGGAGAGAATGGATATAGTGAAGGCAATGGCAATGGCAAGCAAAGTTCAAGTCATGAAGACAGTGATCTACAAGAATGTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCACCTACAAAAGCTGCTGTTGGAGATTACATGGCTGCCTTCAACAATGGACCTAATGAGGCCATTGATGCAGATCCCTCAGCTTCTTCTGCCAACTCCAAATTTGGAACTAGCTCTCTACTTCCATCAGCATCTGCTCTTGACATGGGTTCATTCAAATCCTTTAACTGCCAAATACCTAGGTTCTCTTCTGGCCATGGAACTATTGGGATGTTAGCCGGGACCGGCGGCGCCATCGGCATTTAG 2205 0.4658 MDGYEATRIVFSRIQSMDPENASKIMGLLLIQDHGEKEMIRLAFGPEALLHSVISKARKDLGLPSNSPPTPSTPPSPSPFLSASTNPVNISRQNSTSSSSRLGSGMNLPPALTIPNPSSSSASWAAMSDLQNPEDLMSPNNLVVGSSSTTSSSLPFYANGGSDPIDEYQLQDQLSFLNDGSPNSTLAAAACGGSHHNKSHDLFYPHSDMASSPTGAGDPSLFPSYGWGGPLHRRSCSVNDACLASEDPNSGFGWKPCLYFARGYCKNGTSCRFLHGGGLGEADGAAAAAMVGSPSKIEMMEQCHELLRSKTAQQQRLQLMASSSFPYSSKCMNFLLQQQQQQQQNDTQRAAAAALMMSEDLHKFGRSRLERSDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKKQQQQVDRDFSPCGTPTGLDARDQYDLQLGGRMFYNTQDMLWRRKMEEQADLQQALELQSRRLMGLQLLDIKKQHHHRALSAGSPIPSPTHSPNMFNQTLVHHSFHGTPDSPEENGSASAPSSTAPVSVIGQQTVNISVGKEVGTNNGENGYSEGNGNGKQSSSHEDSDLQECLEHNLPDSPFASPTKAAVGDYMAAFNNGPNEAIDADPSASSANSKFGTSSLLPSASALDMGSFKSFNCQIPRFSSGHGTIGMLAGTGGAIGI* 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1463 734 ProSiteProfiles Zinc finger C3H1-type profile. 251 278 IPR000571 GO:0046872
Amo13g1463 734 SMART c3hfinal6 253 277 IPR000571 GO:0046872
Amo13g1463 734 MobiDBLite consensus disorder prediction 464 486 - -
Amo13g1463 734 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 399 444 IPR000504 GO:0003723
Amo13g1463 734 MobiDBLite consensus disorder prediction 60 125 - -
Amo13g1463 734 MobiDBLite consensus disorder prediction 571 633 - -
Amo13g1463 734 SUPERFAMILY RNA-binding domain, RBD 399 478 IPR035979 GO:0003676
Amo13g1463 734 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN-RELATED 1 722 - -
Amo13g1463 734 SUPERFAMILY CCCH zinc finger 254 276 IPR036855 GO:0046872
Amo13g1463 734 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 256 276 IPR000571 GO:0046872
Amo13g1463 734 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 387 463 IPR000504 GO:0003723
Amo13g1463 734 MobiDBLite consensus disorder prediction 67 81 - -
Amo13g1463 734 MobiDBLite consensus disorder prediction 82 125 - -
Amo13g1463 734 CDD RRM_AtC3H46_like 389 458 IPR034365 -
Amo13g1463 734 Gene3D - 330 479 IPR012677 -
Amo13g1463 734 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 722 - -
Amo13g1463 734 MobiDBLite consensus disorder prediction 571 639 - -
Amo13g1463 734 Gene3D - 244 329 - -
Amo13g1463 734 SMART rrm1_1 388 458 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1463 Amo-Chr13 19583127 19587925 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1463 - - adu:107477482 1330.47