Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1457 ATGAGTGATTCTAAGGTATTTCTATTTGGGTCTTTTACAGAAGATGAAACCAGATCATTGTTGCAGAAGCAGTCTTCTACTCCAGTTAAAGATGAAAAGCCTGTAGAGAAGAGCCCGCTGCAATTTGGTTCTGTGAATGCTGTTAGTGCCAGATCAAGTAACCTCGGAAATTCATCAAAAGCACCAACCAGTTCTAATGTCTCCCATTCTCATAAGTGCAATGGAGTGAAAATTGTCGGTAATAGTTTACTTGGATCATCAGGTTCTATCAAGGAGAACAATGGAGTGAAAATTGTCGGTATTAGTTTACATGGATCATCAGATTCTTTCAAGGAGAATGGCAGCATTATCAATTGCCCTACTGTCTGTTCGAGTATCGATAGTGCAAACGAAGTTAAGGCGGATAGTGTGTCTTCTGTGCCATTGCTTGATGAGGATGGACCCATGAACAAGATTGCAAATTTGAGCCTGGATGCTTCTGAGGCTGGAAGCCTGAATAATGTATGGAAAAATGATGGTGGCCATAATGATTCTGTATCGAAATTATTTAATCAAGATTCCAAAAAGACACCTAACGGGCATATTGTGTCACAAGTTAAAGATTTACTGCCTCGGGGCCTAATAAATTCTGGAAATCTATGCTTTCTCAATGCAACTGTGCAGGCTCTCTTGTCCTGTTCTCCTTTTGTTCAACTTCTGCAAGACTTAAGAACTCGCAACATTCAGAAGGTTGGCTATCCCACATTGACGGCATTCACTGAATTTCTATCTCAATTTGATGTGCCAAGCTCAACCAAATTAAAGAAGAAAGATACAGATGCTTTGGAGACTGGAAGGCCATTCTGCCCAACTATGTTTGTAGATGTTCTAAAAAAGTTTTCTCCGGATTTGCCAAATGTCATGTCAGGAAGACCAAGGCAGGAAGATGCTCAGGAATTTTTGAGCTTTGTAATGGATCAAATGCATGGTGAATTGTTGAAGCTTGAGGGACAGTCTTCAAGTCTTAATGGTAGCAAATCATCTCTAGTTTCTTCTGCTGAAGATGATGAATGGGAAACCGTTGGGCCGAAGAATAAATCTGCTGTAACAAGGACTCAGAGCTTTGTTCCATCAGAATTGAGTGGAATTTTCGGAGGACAACTCAGAAGTTTGGTGAGAGCTAAAGGGAATAGAGCTTCAGCCACTGTTCAACCATATCTCTTGCTCCAGCTTGACATTTATCCTGATGCTGTCCACACAATTGAGGATGCACTTCACCTGTTTTCTGCTCCAGAAACTGTTGAAGGCTACCGAACTACACTCACTGGAAAGCCTGGCGTTGTGACTGCAAGAAAATCTGTACACATTCAGACACTTCCGAAGATATTGATATTGCACCTGGTACGTTTCGGTTATGGAAGCCAAGGAAGCACTAAGCTACTTAAGCCTGTTCACTTCCCTCTAGAGCTGGTATTGGGTCGAGACTTGCTTGTTTCGCCATCTACTGAGGGTCGAAGATATGAATTAGTTGCCACGATTACTCACCATGGAAGGGAGCCTTCAAAGGGGCACTACACTGCCGATGCCCTATATCCTAATGGTCAGTGGCTAAGATTTGATGATGCATCTGTTATTGCCATTGGAGCAAACAAGGTGCTGCATGATCAGGCATATGTCCTTTTCTACAAGCAGTTGTGA 1677 0.4216 MSDSKVFLFGSFTEDETRSLLQKQSSTPVKDEKPVEKSPLQFGSVNAVSARSSNLGNSSKAPTSSNVSHSHKCNGVKIVGNSLLGSSGSIKENNGVKIVGISLHGSSDSFKENGSIINCPTVCSSIDSANEVKADSVSSVPLLDEDGPMNKIANLSLDASEAGSLNNVWKNDGGHNDSVSKLFNQDSKKTPNGHIVSQVKDLLPRGLINSGNLCFLNATVQALLSCSPFVQLLQDLRTRNIQKVGYPTLTAFTEFLSQFDVPSSTKLKKKDTDALETGRPFCPTMFVDVLKKFSPDLPNVMSGRPRQEDAQEFLSFVMDQMHGELLKLEGQSSSLNGSKSSLVSSAEDDEWETVGPKNKSAVTRTQSFVPSELSGIFGGQLRSLVRAKGNRASATVQPYLLLQLDIYPDAVHTIEDALHLFSAPETVEGYRTTLTGKPGVVTARKSVHIQTLPKILILHLVRFGYGSQGSTKLLKPVHFPLELVLGRDLLVSPSTEGRRYELVATITHHGREPSKGHYTADALYPNGQWLRFDDASVIAIGANKVLHDQAYVLFYKQL* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1457 558 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 558 - -
Amo13g1457 558 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 500 518 IPR018200 GO:0004843|GO:0006511
Amo13g1457 558 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 558 - -
Amo13g1457 558 MobiDBLite consensus disorder prediction 330 344 - -
Amo13g1457 558 MobiDBLite consensus disorder prediction 51 70 - -
Amo13g1457 558 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 205 558 IPR028889 -
Amo13g1457 558 MobiDBLite consensus disorder prediction 330 357 - -
Amo13g1457 558 Pfam Ubiquitin carboxyl-terminal hydrolase 206 555 IPR001394 GO:0004843|GO:0016579
Amo13g1457 558 Gene3D Cysteine proteinases 194 557 - -
Amo13g1457 558 MobiDBLite consensus disorder prediction 18 43 - -
Amo13g1457 558 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 206 221 IPR018200 GO:0004843|GO:0006511
Amo13g1457 558 SUPERFAMILY Cysteine proteinases 201 556 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1457 Amo-Chr13 19492548 19496983 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1457 202 558 Miscellaneous Gene Families AT2G24640 28.610 1.26e-22 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1457 K11841 - gmx:100799656 771.541