Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1456 ATGAATTCCTTTCTTCCTAAACCAAAACTCTCCAATCCCCTGAATTCCCCTGTTCCAAAAACCAAGCTTTCAACTTCAATGGATTCAACTCTTTCACAAGACCCCATCTTCTCAATTCTTTCAAAAACTAATCTTTCTTCTGTTCCTATCGATTCCCATTTCTCAAAAACCAAACTTTCTAATCCCACCAACAAGCTTTCTTCCACTCCAAGCGATTCCCCTGTTTCAATAACCAAGCTTTGTTCAGCTACTCCAATGGATTCCCCTACTTCAAAAACACCACTTTCTGCTCCTCCACCATTGTCTGCAGCTTCAAGTTCAATCAGCAGCAGCAGTATCTGCAGCGATAGAAGCAGTGAGACCGACGAAAGCCCCTTCTCCTCTCACCGTTTCGAGCTTCAAGATGTAAAGTTTCAGCTACCAATTCAATCCACACCAACTCCAAGTTCCAATTCTCATAGTCATAGATCACTAGCTGTTCTTTCAGGCCATGTTGGTTCTGTTTCATGTTTAGCACTTTGTGGCGAATTCATACTAAGTGCATCACAGGGTAAAGACATCATAGTATGGCAGCAACCGGATTTGCGCCTTTTCGCCAAATTCGGCCAAGGCGATGGATCGGTTAAGGCCCTTGCATCCATTGGAAACAAGGTTTTCACTGCTCATCAAGATAGTAGGATCAGAGTTTGGAAGGTTTCAAGGAGTTCAGAGAATGTGTTTAGGCTCGTTGACACGCTTCCGACAACAAAGGACTATTTGGGGAAGTTCATGAAGCAAAGCAACTATGTCCAAACAAGGAGGCACCATAAGAGGCTGTGGATTGAGCATGCTGATAGCATTTCATGTTTAACTGTTCATAATGGTTTGATCTATTCAGGGTCATGGGATAAAACCCTTAAGGTTTGGAACCTTTCGGATTTGAAGTGTTTGGAGTCAATTAAGGCTCATGATGATGCAATCAATGGGTTGGTAGCATGTAGAAGAGGGATTGTGTATTCTGCTTCTGCAGATGGAAAGATCAAAGCTTGGGGAATGGAAAGAGAAAGGGAAGGAGGGAAGTTTAAGAAGAGTAACAAGAATTCACATTGTTTGAAAGGGGTTTTGGAGGGTCATAAAGATGTTTCATTGAATTCTGTGGTTGTTTCTGATGATGGGAAATGGGTCTATGGAGGTGGTTCTGATGGTTATGTTATGGGGTGGGAATGTTCCGAGAGTAGTAGCAGTAGTAGTAGTAGTTGTTGGAAGCTTGTTTCTGAGACAAAGGCACATGAAATGGCTGTTTTATGCATGTGCTTAATTGGTGAGCTTTTATGCAGTGGTTCAGCAGATAAAAGCATTGGCATTTGGAAAAGAGAAGCTTTTGGTAAGCTTTGTAAAGTTGGTGTGATTAGTGGCCATGAAGGTCCAGTGAAGTGTTTGCAAGCTTCATGTTCTAATAGAATTGGTGGAGGATTTTTGCTCTATAGTGGAAGCCTTGATAGAAGTGTGAGAGTTTGGTGGGTTCCTAAGTATAATAACAACAATGATATTGAAGAAATAGAGAAGGATAATAACAAGTCTATTGTTTCATGTTAA 1575 0.414 MNSFLPKPKLSNPLNSPVPKTKLSTSMDSTLSQDPIFSILSKTNLSSVPIDSHFSKTKLSNPTNKLSSTPSDSPVSITKLCSATPMDSPTSKTPLSAPPPLSAASSSISSSSICSDRSSETDESPFSSHRFELQDVKFQLPIQSTPTPSSNSHSHRSLAVLSGHVGSVSCLALCGEFILSASQGKDIIVWQQPDLRLFAKFGQGDGSVKALASIGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVHNGLIYSGSWDKTLKVWNLSDLKCLESIKAHDDAINGLVACRRGIVYSASADGKIKAWGMEREREGGKFKKSNKNSHCLKGVLEGHKDVSLNSVVVSDDGKWVYGGGSDGYVMGWECSESSSSSSSSCWKLVSETKAHEMAVLCMCLIGELLCSGSADKSIGIWKREAFGKLCKVGVISGHEGPVKCLQASCSNRIGGGFLLYSGSLDRSVRVWWVPKYNNNNDIEEIEKDNNKSIVSC* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1456 524 ProSiteProfiles Trp-Asp (WD) repeats profile. 273 312 IPR001680 GO:0005515
Amo13g1456 524 ProSiteProfiles Trp-Asp (WD) repeats profile. 463 499 IPR001680 GO:0005515
Amo13g1456 524 Pfam WD domain, G-beta repeat 460 499 IPR001680 GO:0005515
Amo13g1456 524 Pfam WD domain, G-beta repeat 275 303 IPR001680 GO:0005515
Amo13g1456 524 Pfam WD domain, G-beta repeat 366 400 IPR001680 GO:0005515
Amo13g1456 524 MobiDBLite consensus disorder prediction 54 126 - -
Amo13g1456 524 Gene3D - 367 524 IPR015943 GO:0005515
Amo13g1456 524 MobiDBLite consensus disorder prediction 54 121 - -
Amo13g1456 524 CDD WD40 157 499 - -
Amo13g1456 524 ProSitePatterns Trp-Asp (WD) repeats signature. 290 304 IPR019775 -
Amo13g1456 524 Gene3D - 262 366 IPR015943 GO:0005515
Amo13g1456 524 SMART WD40_4 456 500 IPR001680 GO:0005515
Amo13g1456 524 SMART WD40_4 413 450 IPR001680 GO:0005515
Amo13g1456 524 SMART WD40_4 154 191 IPR001680 GO:0005515
Amo13g1456 524 SMART WD40_4 266 303 IPR001680 GO:0005515
Amo13g1456 524 SMART WD40_4 306 344 IPR001680 GO:0005515
Amo13g1456 524 SMART WD40_4 194 231 IPR001680 GO:0005515
Amo13g1456 524 SMART WD40_4 361 401 IPR001680 GO:0005515
Amo13g1456 524 SUPERFAMILY WD40 repeat-like 156 505 IPR036322 GO:0005515
Amo13g1456 524 Gene3D - 149 261 IPR015943 GO:0005515
Amo13g1456 524 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 99 514 IPR045182 -
Amo13g1456 524 PRINTS G protein beta WD-40 repeat signature 290 304 IPR020472 -
Amo13g1456 524 PRINTS G protein beta WD-40 repeat signature 437 451 IPR020472 -
Amo13g1456 524 PRINTS G protein beta WD-40 repeat signature 487 501 IPR020472 -
Amo13g1456 524 PANTHER OS01G0946100 PROTEIN 99 514 - -
Amo13g1456 524 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1456 Amo-Chr13 19488531 19490559 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1456 263 499 Miscellaneous Gene Families AT5G08390 22.131 2.22e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1456 - - lang:109353136 655.595