Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1367 ATGAGAGGCCTCCTTTCAAGTACGAAGCTCATTGCTTCGAAGCTCTTCCATCATCACCATGGAGGAGTAGCAGCAGCAACATCACCACCTCAATTGATGCGGAACATGAGCCTCATTCCAATGGTGATCGAGCACTCCTCCCGAGGAGAGAGAGCCTACGATATCTTCTCCCGACTCCTCAAGGAGCGCATCGTCTGCATCAACGGACCCATCTCCGACGACACCGCACACGTCGTCGTCGCCCAGCTCCTCTTCCTCGAGTCCGAGAACCCTTCCAAGCCCATCCACATGTACCTCAATTCCCCCGGTGGTGCCGTCACTGCAGGTCTTGCTATTTATGATACTATGCAATACATCCGGTCTCCGATTCATACAATTTGTTTGGGTCAAGCTGCATCTATGGGTTCTTTGCTATTGGCTGCGGGTGCTAAGGGTCAGAGGCGCTCTCTTCCAAATGCAACAGTCATGATTCATCAGCCTTCTGGTGGATACAGTGGTCAGGCAAAAGATATTGCTATTCATACCAAGCAGATTGTTCGGATGTGGGATTCCTTGAATGCAATTTATGCAAAGCATACAGGCCAACCAGTTGATATTATTCAGAAGAATATGGATAGGGATTATTTCATGACTGCAGAGGAGGCAAAGGAGTTTGGAATTATTGATGAGGTTATTGATCAGAGACCATTGACTTTGGTTTCAGATGCTGTTACTAGTGAAGACAAAGATAAAGACTCTAGTTAG 744 0.4758 MRGLLSSTKLIASKLFHHHHGGVAAATSPPQLMRNMSLIPMVIEHSSRGERAYDIFSRLLKERIVCINGPISDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGAVTAGLAIYDTMQYIRSPIHTICLGQAASMGSLLLAAGAKGQRRSLPNATVMIHQPSGGYSGQAKDIAIHTKQIVRMWDSLNAIYAKHTGQPVDIIQKNMDRDYFMTAEEAKEFGIIDEVIDQRPLTLVSDAVTSEDKDKDSS* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1367 247 PRINTS Clp protease catalytic subunit P signature 54 69 IPR001907 GO:0004176|GO:0004252|GO:0006508
Amo13g1367 247 PRINTS Clp protease catalytic subunit P signature 94 114 IPR001907 GO:0004176|GO:0004252|GO:0006508
Amo13g1367 247 PRINTS Clp protease catalytic subunit P signature 125 142 IPR001907 GO:0004176|GO:0004252|GO:0006508
Amo13g1367 247 PRINTS Clp protease catalytic subunit P signature 146 165 IPR001907 GO:0004176|GO:0004252|GO:0006508
Amo13g1367 247 PRINTS Clp protease catalytic subunit P signature 203 222 IPR001907 GO:0004176|GO:0004252|GO:0006508
Amo13g1367 247 Pfam Clp protease 48 227 IPR023562 -
Amo13g1367 247 ProSitePatterns Endopeptidase Clp serine active site. 125 136 IPR018215 -
Amo13g1367 247 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 31 245 IPR023562 -
Amo13g1367 247 Gene3D - 29 232 - -
Amo13g1367 247 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 31 245 - -
Amo13g1367 247 CDD S14_ClpP_2 54 224 IPR001907 GO:0004176|GO:0004252|GO:0006508
Amo13g1367 247 ProSitePatterns Endopeptidase Clp histidine active site. 147 160 IPR033135 -
Amo13g1367 247 SUPERFAMILY ClpP/crotonase 46 228 IPR029045 -
Amo13g1367 247 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 38 228 IPR001907 GO:0004176|GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1367 Amo-Chr13 18190858 18193080 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1367 K01358 - jre:108988528 390.193