Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1287 ATGGCTACCAACACCATCATCAATGTCCACACTCACACTGAAACTGCACAGCCCAACATCACTCCTACAAAGACCGTTGATTCTCACTCTGTTCTTAGAAGGTTGCAGTCTGAATTGATGGCTTTGATGATGAGTGGAGATTGTGGTATATCTGCATTTCCGGAAGAGGACAACATAATGTTATGGAAAGGGACAATTAAAGGAAGCAAGGACACAGTGTTTGAAGGAACTGAGTATAAGTTGTCACTCTCTTTTCCCAATGATTATCCTTTCAAGCCTCCTAAAGTCAAGTTTGAAACTACCTGCTTCCATCCCAATCTTGATCTTCATGGCAACATTTGCTTGGACATACTTCAGGATAAATGGTCATCTGCTTACGATGTTAGAACAATTCTTCTATCCATACAAAGTCTGCTTGGAGAGCCAAACATTAGTTCACCACTAAATCCACAAGCAGCACAGCTTTGGAGCAATCAAGAAGAATACAGGAAGATGGTACAGAAGTTGTACAAAACAACAAGTGCTTAG 528 0.4091 MATNTIINVHTHTETAQPNITPTKTVDSHSVLRRLQSELMALMMSGDCGISAFPEEDNIMLWKGTIKGSKDTVFEGTEYKLSLSFPNDYPFKPPKVKFETTCFHPNLDLHGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNPQAAQLWSNQEEYRKMVQKLYKTTSA* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1287 175 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 103 118 IPR023313 -
Amo13g1287 175 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 30 175 IPR000608 -
Amo13g1287 175 Pfam Ubiquitin-conjugating enzyme 34 168 IPR000608 -
Amo13g1287 175 Gene3D Ubiquitin Conjugating Enzyme 23 174 IPR016135 -
Amo13g1287 175 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 14 173 - -
Amo13g1287 175 SMART ubc_7 33 175 - -
Amo13g1287 175 SUPERFAMILY UBC-like 26 171 IPR016135 -
Amo13g1287 175 CDD UBCc 33 170 IPR000608 -
Amo13g1287 175 PANTHER BNAC06G03670D PROTEIN 14 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1287 Amo-Chr13 16744636 16746592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1287 31 139 Miscellaneous Gene Families AT3G17000 31.579 1.53e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1287 K06688 - gmx:100305664 300.056