Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1194 ATGGGGGTTTGTGTTGAAGAAAGAGGAGAGTTGAACGGTGCAGCTGTAAGATTGACAAGAACGGTTAAAGTGAGCAACATCTCTTCAGGCGCAACAGAGCAAGATTTGAAGGAATTTCTGACATATCCTGGAAAAATAGAACATATAGAAATGAAGAGTGAGAATAATTCAAAAGTTGCATATGTTACCTTCAATAGTTCAGATGGAGCAGAAACTGCAGTTCTTCTATCGGGAGCTGTGTTGGTTGGACAAGCTATAACCATAGTTTTGGCTACAGATTATGTTGCACCTGCCTCGGCTGCATCTACAATCCCAACTGCAACAGGAGCCACAAATGCAGATGCTGTGACTTCTGAGTCTGGTTTGTTAACAGCGGAGGATGTCGTGAGTAGCATGCTGGCCAAGGGCTACATTTTGGGCCAAGACGTATTAAACCGCGCAAAGTCATTTGATGAGAGGCACCAGCTTACTTCTACTGCCTCGTCGAAAGTTGCTACATTGGACCAGAAGGTTGGTATCAGTGAAAAAATCACTGCTGGTTCGATGCTGGTGAATGATAAGGTCAAGGAAATGGATGAGAGGTATCAAGTATCCGAGAAGGCTAAGTCTGCCATGTCAGCGGCAGAGCAGTCGCTGAGCACTGCCGGATCAACTCTCATGAAGAACCGTTATGTGTTAACCGGGACAACATGGGTGACTGGTGCATATAGCAAGGTTGCTAAGGCTGCTGAGGAAGTGGGACAGAAAACTATGGAGAAGGTTTTAGCACAAGAAAATCAAGAAAACAGTACAGAAGTCAATAAAGATGTTCACAACAGCACAACCACCACCATGCCTGAACCTCAACATGTTGCCAACACAGCTGTTCAACCTCCTAGAAATGAACCACCACAACAGGCTTCAACAACCAATCACCCTTCTAACCCTTCCACAACTCAAGGCTTGAACCCCTAA 954 0.4518 MGVCVEERGELNGAAVRLTRTVKVSNISSGATEQDLKEFLTYPGKIEHIEMKSENNSKVAYVTFNSSDGAETAVLLSGAVLVGQAITIVLATDYVAPASAASTIPTATGATNADAVTSESGLLTAEDVVSSMLAKGYILGQDVLNRAKSFDERHQLTSTASSKVATLDQKVGISEKITAGSMLVNDKVKEMDERYQVSEKAKSAMSAAEQSLSTAGSTLMKNRYVLTGTTWVTGAYSKVAKAAEEVGQKTMEKVLAQENQENSTEVNKDVHNSTTTTMPEPQHVANTAVQPPRNEPPQQASTTNHPSNPSTTQGLNP* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1194 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 86 IPR000504 GO:0003723
Amo13g1194 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 20 93 IPR000504 GO:0003723
Amo13g1194 317 SUPERFAMILY RNA-binding domain, RBD 16 94 IPR035979 GO:0003676
Amo13g1194 317 PANTHER BINDING PARTNER OF ACD11 1 19 275 - -
Amo13g1194 317 MobiDBLite consensus disorder prediction 257 317 - -
Amo13g1194 317 Gene3D - 16 89 IPR012677 -
Amo13g1194 317 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 19 275 - -
Amo13g1194 317 SMART rrm1_1 21 89 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1194 Amo-Chr13 15571338 15573346 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1194 - - ccaj:109798678 335.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1194 13 15571338 15573346 Amo13g1194 13 15571338 15573346 ECH